Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19340 337 / 7e-114 Methyltransferase MT-A70 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G041400 [exp] 382 / 1e-131 AT1G19340 439 / 5e-153 Methyltransferase MT-A70 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05063 [flax] [poplar] MT-A70 MT-A70
Representative CDS sequence Show only first row Show all	>Lus10032722 pacid=23158934 polypeptide=Lus10032722 locus=Lus10032722.g ID=Lus10032722.BGIv1.0 annot-version=v1.0 ATGGCAGGTTCCGAGTCCGACAGCAGTGATCAGCTATCTACCTTCTTACAGTCTGGGATTTACCGCTTCAGCGAATCCCCCGTCGTGTTCATGGACCCAG TCCGCGTCATCAACACTTCATATTCCCGAATTAGGGTTTCTCCCTCCGCCTACTATTCGCGCTTCTTCAACTCCAATATCTCCGGCGACCATGAAACAGA GCTCTCTTCAAGTTCCAGGAAGCGGAAGAGGAAAGAAAAAAAGCCTACTCGCGCCTTAAACGAAAGAGAACGAGCTGCCGACTTGCGCCACCGGCAAGTG CGGCCTTTGTTAATGAAAGCACACGAATGTTTCGTTGGAGCTTCTGATCTCTTGGCGGTTCTCAGAAGTTTGAGTTGTGATTCTTCGTTGACGGTGGAGC GTCGAGAATCGACTGTTGCCGGAAATCAACCATCGTTTCTTGAGTTAGGAAAGGTTTGGCAAGCCCCGCTTTACGAGATCACTCTCAAGTTTCCTCCAGG GCCGGACGAAGACGGTAGCCAGACTGTCTCGAGCAGCGGCTTCAATCTTATATTGATTGATCCACCATGGGAAAATGCAAGTGCACATCAGAAACTAATG TACCCAACTTTGCCAAATCGTTATTTCTTGAGCCTTCCTATTAAACAGCTTGTGCATTCAGATGGGGCTCTTGTAGCTTTATGGGTGACCAATAGGGAGA GACTACGGAGGTTTGTCGAGGAAGAGCTGTTTCCCTCATGGGGAGTTACTTACGCAGCTACTATTTTCTGGTTGAAGGTCAAACCAGATGGCTCATTGAC CAGCAATTTAGATCTGTTTCATCATAGGCCATATGAATGCCTTCTTTTGGGCTATTGCGACAGTAAGGGTGCAGGTTGTGAGCTGCTGCAAAAAATGGGA CCTATAGAAGATAAAATCGTAATAAGCATCCCAGGAGATTACTCAAGAAAGCTGCCAGTTGGAGAACTTGTGCGAAAGCATGTTCCAAGCGGCGGAACTA CTCGGTGTATTGAACTTTTTGCGAGGGAGATGATGGCAGGATGGACTTCTTGGGGCAACGAACCACTTCATTTCCAGGATTCCAGTCATTTCTTGTGA
AA sequence Show only first row Show all	>Lus10032722 pacid=23158934 polypeptide=Lus10032722 locus=Lus10032722.g ID=Lus10032722.BGIv1.0 annot-version=v1.0 MAGSESDSSDQLSTFLQSGIYRFSESPVVFMDPVRVINTSYSRIRVSPSAYYSRFFNSNISGDHETELSSSSRKRKRKEKKPTRALNERERAADLRHRQV RPLLMKAHECFVGASDLLAVLRSLSCDSSLTVERRESTVAGNQPSFLELGKVWQAPLYEITLKFPPGPDEDGSQTVSSSGFNLILIDPPWENASAHQKLM YPTLPNRYFLSLPIKQLVHSDGALVALWVTNRERLRRFVEEELFPSWGVTYAATIFWLKVKPDGSLTSNLDLFHHRPYECLLLGYCDSKGAGCELLQKMG PIEDKIVISIPGDYSRKLPVGELVRKHVPSGGTTRCIELFAREMMAGWTSWGNEPLHFQDSSHFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19340			Methyltransferase MT-A70 famil...		Lus10032722 [exp]	0	1
AT1G73020			unknown protein		Lus10009732 [exp]	1.0	0.9179
AT5G25800			Polynucleotidyl transferase, r...		Lus10042779 [exp]	2.0	0.8995
AT5G40660			ATP12 protein-related (.1)		Lus10024202 [exp]	4.2	0.8674
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	4.6	0.8944
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10038623 [exp]	4.9	0.8755
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10030562 [exp]	5.2	0.8766
AT2G44980		ASG3	ALTERED SEED GERMINATION 3, SN...		Lus10028186 [exp]	6.2	0.8736
AT4G10050			esterase/lipase/thioesterase f...		Lus10041054 [exp]	7.4	0.8892
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	8.2	0.8895
AT1G23890			NHL domain-containing protein ...		Lus10030639 [exp]	8.8	0.8836

Compare expression of checked genes

Lus10032722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.