Plant FIBer expression Database

Lus10032723 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040010
[exp]
285 / 1e-95 ND /
Lus10034914
[exp]
193 / 6e-61 ND /
Lus10012295
[exp]
159 / 9e-46 ND /
Lus10005499
[exp]
110 / 4e-29 ND /
Lus10038610
[exp]
104 / 2e-26 ND /
Lus10034889
[exp]
107 / 5e-26 AT1G09190 115 / 9e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10002009
[exp]
78 / 4e-16 ND /
Lus10036784
[exp]
73 / 1e-14 ND /
Lus10005830
[exp]
56 / 9e-10 ND /
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10032723 pacid=23159006 polypeptide=Lus10032723 locus=Lus10032723.g ID=Lus10032723.BGIv1.0 annot-version=v1.0
ATGAAAGACATTGCAGAGTCTGTGATTCACCATGGAGGTCGAATGGTTATGTCGTCGGAGGGAGCAGAATACAAAGGAGGGTCTGTTACTGACACTCATA
TCGATAGGCAGTTACTCAGTTACTTTCACTTGGTCGCCATTGGCATTGGAGAGCTAGGTTACACATCCGCTAATAGGATGTGGTATGTCACTCCCGGATC
TACTATAGCTGATGGGATAGTTATGGGTGAAGCTTCGAAGAGAGGGGTTATTAACATCTACATGGAAGGCACAACTAACCTCGAAGGAATGGGTGAAAAT
GACATACCAAGTGATCCTAACGTTAAAGACGATGGCCATGGTAGCACTGATTCGGAAGCTGGAGTTTCTAAAATGGCTGCTCGTGAGGGGATCATTCACT
TGATCGATGACTCAGGTAGAACTTTAGATCCGGAGTTCTATATTGCAATGGAGAATCTTGGCATACTGGAGAAGAGGAGATCTCGGGCTAGTTACGATTC
CGATGGAGAAGAAGAGGTTCAGTTTGGGTGGCATATCAAGTTAGCTAGGGAATCAGCCAAGGCTGCGAAGGAGACTGCAAAGAGAGCACAAGTAGATCCA
AACTCATTTAAAAATGTGATGCTTGAGGTTGAAGATGAAGTTGATGGTACCAACTTCGTTGTGAACACTGACAAGTCGGATGCTGATGATGAATCAGAAG
ACCAGACCTACCAGGCTCCAAATATTCCTTGGTGTTGGTATAGTACTGGGATAAGAGAGATTCGGAACCACTGTGGGAAATGTGGCAATCGAGGCTATAA
TGCAAGGAACTGTTCAAACCGTGATGATGATGGTGAAAAATATGGAGGGTGTATCCTTATTGGAGGAGAAACTAACCAAGAAGCTGGAGCAAGGCATCAG
AGGAGGACCGGGGAGCAATCATCAGAGGTTCAGGGTAGGCCAATCAAGCGCACTATGACCTACGAGAAGTGCGGGTCACTGGACACAATGCTCGTCGGTG
TCTACCAGCTCTCTGGCCTCAGAATCAAATCCATCCAGGCTCTAGAACCGCTGCAAGAAGGAGTAGTTACATGGCCTTGCTGCAGAGATGCAACGCTTAT
ATTGACCAGGCAACCGGAACTACTCCTAACAACCAGGAAGAATACATCAATAGGGGCTCCCAGCCACCCCAGTCTCAACCATCATAGTAGTACCATGAAG
TCGTAG
AA sequence
>Lus10032723 pacid=23159006 polypeptide=Lus10032723 locus=Lus10032723.g ID=Lus10032723.BGIv1.0 annot-version=v1.0
MKDIAESVIHHGGRMVMSSEGAEYKGGSVTDTHIDRQLLSYFHLVAIGIGELGYTSANRMWYVTPGSTIADGIVMGEASKRGVINIYMEGTTNLEGMGEN
DIPSDPNVKDDGHGSTDSEAGVSKMAAREGIIHLIDDSGRTLDPEFYIAMENLGILEKRRSRASYDSDGEEEVQFGWHIKLARESAKAAKETAKRAQVDP
NSFKNVMLEVEDEVDGTNFVVNTDKSDADDESEDQTYQAPNIPWCWYSTGIREIRNHCGKCGNRGYNARNCSNRDDDGEKYGGCILIGGETNQEAGARHQ
RRTGEQSSEVQGRPIKRTMTYEKCGSLDTMLVGVYQLSGLRIKSIQALEPLQEGVVTWPCCRDATLILTRQPELLLTTRKNTSIGAPSHPSLNHHSSTMK
S

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10032723
[exp]
0 1

Lus10032723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.