Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17730 65 / 8e-12 NAC ANAC057 NAC domain containing protein 57 (.1) AT5G04410 65 / 3e-11 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT1G65910 65 / 4e-11 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G10500 63 / 1e-10 NAC ANAC053 NAC domain containing protein 53 (.1) AT2G33480 62 / 1e-10 NAC ANAC041 NAC domain containing protein 41 (.1.2) AT4G10350 62 / 2e-10 NAC BRN2, NST4, ANAC070 BEARSKIN 2, NAC domain containing protein 70 (.1) AT5G66300 61 / 4e-10 NAC ANAC105, VND3 VASCULAR-RELATED NAC-DOMAIN 3, Arabidopsis NAC domain containing protein 105, NAC domain containing protein 105 (.1) AT4G27410 61 / 5e-10 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT4G35580 61 / 5e-10 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT1G33060 61 / 5e-10 NAC ANAC014 NAC 014 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018810 [exp] 546 / 0 AT5G04410 64 / 3e-11 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10042284 [exp] 68 / 2e-12 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 68 / 2e-12 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10001809 [exp] 61 / 2e-10 AT5G13180 271 / 6e-92 VND-interacting 2, NAC domain containing protein 83 (.1) Lus10002581 [exp] 61 / 3e-10 AT5G13180 273 / 6e-93 VND-interacting 2, NAC domain containing protein 83 (.1) Lus10026617 [exp] 60 / 7e-10 AT1G69490 298 / 1e-101 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Lus10015076 [exp] 60 / 1e-09 AT1G61110 247 / 5e-80 NAC domain containing protein 25 (.1) Lus10025118 [exp] 59 / 2e-09 AT2G17040 258 / 1e-85 NAC domain containing protein 36 (.1) Lus10030446 [exp] 59 / 2e-09 AT1G69490 302 / 2e-103 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G041300 [exp] 246 / 4e-78 AT1G65910 75 / 2e-14 NAC domain containing protein 28 (.1) Potri.007G065400 [exp] 62 / 1e-10 AT1G56010 337 / 4e-116 Arabidopsis NAC domain containing protein 22, Arabidopsis NAC domain containing protein 21, NAC domain containing protein 1 (.1.2) Potri.015G030200 [exp] 61 / 2e-10 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.009G052200 [exp] 61 / 4e-10 AT4G27410 188 / 1e-55 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.006G129400 [exp] 61 / 5e-10 AT1G61110 247 / 3e-80 NAC domain containing protein 25 (.1) Potri.010G166200 [exp] 60 / 5e-10 AT1G69490 305 / 1e-104 Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) Potri.009G052300 [exp] 60 / 9e-10 AT1G01720 179 / 2e-53 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.019G066000 [exp] 60 / 1e-09 AT4G10350 451 / 8e-160 BEARSKIN 2, NAC domain containing protein 70 (.1) Potri.013G092400 [exp] 59 / 2e-09 AT4G10350 436 / 5e-154 BEARSKIN 2, NAC domain containing protein 70 (.1) Potri.008G031800 [exp] 59 / 2e-09 AT5G04410 511 / 6e-177 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10032724 pacid=23159016 polypeptide=Lus10032724 locus=Lus10032724.g ID=Lus10032724.BGIv1.0 annot-version=v1.0 ATGTGTCCTCCTGCACAAAACCATATTGCTGATATCGGTTTTGATGGTACGCCGGAGGAGATTTTCAAGTCTCTGCTCAAAATGATGAGGGGATCAACGC TCCCCAGCAATGTTGTTGATGACATTTGTCCTTTCATGTATGCTCCATCGAATCTACCTGCTGATATCTGGTACTTGTTCCGTAAATCGGCAGAGAACAA CGACACAGGAAAGGGGTTCTGGAAACTAAAGGGGGAGTCATTGGAACTCTTCACAGATTCGGTGATCACTGGTTGGAGATCCACCTTGGAGTACTATGAA GGCAAAGAGCCGGAAGTTGTTAAGACCGATTGGTTAATGCAGCAATATTGGGTAACTGAGAAGGATCTCGTTGAAAGCAGCAAGGAAAAGGAATCGAACA GTCTGTGCAGAGTCTTCCTTGAACGAGATCATGTAGATGTTAAGAGGGAGTGCGTGGCCACTCCTCTTGTTTTAGATGAAGCTGAATCTCAGAGGCGACT AATTACCTCAAGTGTTTGTAGTAGTGGCTCCACAAGCAAGGCTGAGGGAGATAGAATAGCTGTCGCAGATGTATGGGCTAATTTACTGGATGAATGTTTT GCTGGAGGACACTACTTGGAAATGCTTGATCTGGCTGTTCCAGCATCAAGTTCTTCAGGCACTGATAATTCAAGTTGTATGAGCATATCATCAGATGAGT ATTTTGATACTTGGGCTTTGCTACGTGAAATAGAATCTGATAGTATTCAAGATTCTGTCCAAAAGACTGGTGAGTGCAAGCTGAATATTTCCACCACTTG CAAGCCTGAAGAATTGACAATGAGTCCACGTTCTTCAGTGTCAATTGTCAGCACTCGAGAAACCGAGCTAGCATCTGAACAGGTAGCCGGGACTGGTCCA TCATTGTCTGATATGTCCGAGCAACACAAAGATATAAATGATAAGGCTAAGCAGAAGCAGAAACAGCAGCAAGTGTCAAGAAAGCATAAATTGGCTGACA AGGACAAGGGTTCGTCGTCAGATTCTTCTCATGGAGGTTCCTCGTCTGGTGCGTCTAGAGATGTAAAGAAAGAGGGCTCAAAGGGTACAATGAAGAAACG AAAGAATAAGTACTTATGCTTCATGGCATTTAACTTCATCTTCTGA
AA sequence Show only first row Show all	>Lus10032724 pacid=23159016 polypeptide=Lus10032724 locus=Lus10032724.g ID=Lus10032724.BGIv1.0 annot-version=v1.0 MCPPAQNHIADIGFDGTPEEIFKSLLKMMRGSTLPSNVVDDICPFMYAPSNLPADIWYLFRKSAENNDTGKGFWKLKGESLELFTDSVITGWRSTLEYYE GKEPEVVKTDWLMQQYWVTEKDLVESSKEKESNSLCRVFLERDHVDVKRECVATPLVLDEAESQRRLITSSVCSSGSTSKAEGDRIAVADVWANLLDECF AGGHYLEMLDLAVPASSSSGTDNSSCMSISSDEYFDTWALLREIESDSIQDSVQKTGECKLNISTTCKPEELTMSPRSSVSIVSTRETELASEQVAGTGP SLSDMSEQHKDINDKAKQKQKQQQVSRKHKLADKDKGSSSDSSHGGSSSGASRDVKKEGSKGTMKKRKNKYLCFMAFNFIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10032724 [exp]	0	1
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031891 [exp]	1.4	0.9157
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	2.4	0.9068
AT1G19270		DA1	DA1 (.1)		Lus10018789 [exp]	2.4	0.9063
AT1G23780			F-box family protein (.1)		Lus10006139 [exp]	3.2	0.9030
AT3G61800			unknown protein		Lus10004000 [exp]	6.3	0.9033
AT3G57810			Cysteine proteinases superfami...		Lus10015803 [exp]	8.5	0.8780
AT1G67300			Major facilitator superfamily ...		Lus10034930 [exp]	8.9	0.8745
AT1G34320			Protein of unknown function (D...		Lus10017136 [exp]	9.9	0.8946
					Lus10040920 [exp]	16.0	0.8753
AT4G34140			D111/G-patch domain-containing...		Lus10039947 [exp]	16.7	0.8705

Compare expression of checked genes

Lus10032724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.