Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75060 275 / 7e-94 unknown protein AT1G19330 256 / 2e-86 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018805 [exp] 373 / 8e-132 AT1G75060 288 / 5e-98 unknown protein Lus10028777 [exp] 165 / 7e-51 AT1G75060 179 / 2e-56 unknown protein Lus10017506 [exp] 163 / 5e-50 AT1G75060 178 / 6e-56 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G133500 [exp] 319 / 2e-111 AT1G75060 312 / 2e-108 unknown protein Potri.014G041200 [exp] 305 / 3e-106 AT1G75060 317 / 3e-110 unknown protein Potri.001G101600 [exp] 159 / 1e-48 AT1G75060 178 / 7e-56 unknown protein Potri.003G130100 [exp] 158 / 2e-48 AT1G75060 178 / 8e-56 unknown protein Potri.005G088101 [exp] 52 / 3e-09 AT1G19330 55 / 9e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032725 pacid=23158953 polypeptide=Lus10032725 locus=Lus10032725.g ID=Lus10032725.BGIv1.0 annot-version=v1.0 ATGCTGGAGACGATGGAGAGTTCTGTGACCGGAGGTGGAGGAGGGTTCTCTCACTTTCAGAGCTGCAGCGGAGATAGCAGCGAGGAGGAGCTCTCCGTAC TGCCACGTCATACCAAGGTGGTTGTCACCGGCAATAACAGGACCAAGTCGGTGCTGGTCGGACTTGAAGGAGTAGTTAAGAAGGCTGTCGGTCTCGGCGG TTGGCATTGGCTGGTTCTTACGAATGGGATAGAAGTGAAGCTACAGAGAAATGCCCTGAGTGTAATCGAGGCACCAACTGGGAATGAGGATGACGATGAT CTGGAATTCGAGACTGTACAGTGGAATGTCTCAGATATGGCGTCTGATGATACCCAAAAGTCCCACAGATCATCAAGGCATCGAACAAATAAGTCATCGG GATCATCTCACAAGTCCATGAGTAGATCATCTCTCTCTTGTGACTCACACTCTTATAAGAGTTCTGTTTCTACGCATCGTGGGTCCGCGAAGGTTGACCT GAGCAAACTGGAGATGGCTGCACTATGGAGATATTGGCGACACTTCAACCTGATGGATGCTTTCCCGAATCCGTCCAAGGAGCAGCTGATTGATGTGGTG CAGAGGCATTTCATGACACAGGATGATGGTGTTTGTTTGTTTGTTGGGTGGGGAAGCAATTGGATGAGTTGCAGGTAA
AA sequence Show only first row Show all	>Lus10032725 pacid=23158953 polypeptide=Lus10032725 locus=Lus10032725.g ID=Lus10032725.BGIv1.0 annot-version=v1.0 MLETMESSVTGGGGGFSHFQSCSGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLEGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEDDDD LEFETVQWNVSDMASDDTQKSHRSSRHRTNKSSGSSHKSMSRSSLSCDSHSYKSSVSTHRGSAKVDLSKLEMAALWRYWRHFNLMDAFPNPSKEQLIDVV QRHFMTQDDGVCLFVGWGSNWMSCR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75060			unknown protein		Lus10032725 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10002242 [exp]	48.6	0.5397
AT3G49550			unknown protein		Lus10000077 [exp]	63.7	0.5391
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003118 [exp]	124.4	0.5291
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Lus10028252 [exp]	131.2	0.5264
AT5G07630			lipid transporters (.1)		Lus10027222 [exp]	169.2	0.4964
AT2G18730		ATDGK3	diacylglycerol kinase 3 (.1)		Lus10006991 [exp]	183.1	0.5071
AT3G54880			unknown protein		Lus10038690 [exp]	204.8	0.4989
AT3G47570			Leucine-rich repeat protein ki...		Lus10030855 [exp]	218.7	0.5002

Compare expression of checked genes

Lus10032725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.