Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75030 320 / 2e-111 ATLP-3 thaumatin-like protein 3 (.1) AT1G75050 313 / 2e-108 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 287 / 2e-98 PR-5, PR5 pathogenesis-related gene 5 (.1) AT1G19320 268 / 7e-91 Pathogenesis-related thaumatin superfamily protein (.1) AT5G24620 262 / 3e-86 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38660 247 / 5e-81 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G24180 244 / 5e-81 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT1G75800 241 / 4e-79 Pathogenesis-related thaumatin superfamily protein (.1) AT1G73620 239 / 5e-79 Pathogenesis-related thaumatin superfamily protein (.1) AT1G18250 237 / 1e-78 ATLP-1 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009058 [exp] 246 / 4e-82 AT1G73620 376 / 2e-133 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 244 / 1e-80 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 243 / 2e-79 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013561 [exp] 241 / 4e-79 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028447 [exp] 238 / 5e-78 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017265 [exp] 237 / 2e-77 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10015705 [exp] 234 / 3e-77 AT1G75030 256 / 6e-86 thaumatin-like protein 3 (.1) Lus10017266 [exp] 236 / 4e-77 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10041901 [exp] 235 / 5e-77 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G040700 [exp] 351 / 2e-123 AT1G75030 342 / 5e-120 thaumatin-like protein 3 (.1) Potri.009G132500 [exp] 248 / 1e-81 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G173200 [exp] 247 / 3e-81 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G112600 [exp] 245 / 1e-80 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.015G000800 [exp] 244 / 1e-80 AT5G24620 351 / 4e-120 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G241000 [exp] 243 / 9e-80 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.015G039200 [exp] 240 / 1e-79 AT1G73620 352 / 1e-123 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G240900 [exp] 242 / 2e-79 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.012G004800 [exp] 241 / 3e-79 AT5G24620 358 / 1e-122 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G112700 [exp] 240 / 5e-79 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10032726 pacid=23159032 polypeptide=Lus10032726 locus=Lus10032726.g ID=Lus10032726.BGIv1.0 annot-version=v1.0 ATGGCGTCCACTACATCCTTTCCCTTCCTCTTAATAATCTTTCTCGGCTACATTAACTACATTGCGCACGCCACCGTCTTCACCCTCCTCAACCAGTGTA CATACACCATCTGGCCAGGAACCCTTTCCGGAAATGGCGCCGCCCTCCTCGGTGACGGTGGCTTCCAACTATCCCCAAGCGCCTCCGCCCAATTCCCTGC CCCGCCCGGCTGGTCTGGGCGATTCTGGACGCGAACTGGCTGCTCCTTCGACGCCTCAGGCAACGGCAAATGCATCACCGGCGACTGCGGTGGTACACTC AAGTGCTCTGGCGGCGGATCCCCTCCCGTTTCCCTGGCCGAGTTCACCATCGCTGCTGGCCCGGGGGAGAAGGACTTCTACGACGTCAGCCTGGTCGACG GGTACAACGTCGGCGTCGGAGTGAAGCCTATCGGGGGCGGCGCCTTGGGTGACTGCCGGTACGCGGGTTGCGTTACGGATCTGAACGCAGGTTGTCCGCC GGAGCTCCGGATCGTGGATTCAGTTGGGGCGGTGGTGGCTTGTAAGAGCGCGTGCGAGGCGTTTAACGCGCCGGAGTTCTGCTGCACTGGGGACCACGCG ACGCCGCAGACTTGCTCGCCGTCGCAGTATTCGATGATGTTTAAGAATGCCTGTCCCACGGCCTACAGTTATGCTTATGATGATGCTTCAAGTACTTTCA CTTGTACCGGATCCGACTATTTGATCACTTTCTGCCCCAACGGGTCCTGA
AA sequence Show only first row Show all	>Lus10032726 pacid=23159032 polypeptide=Lus10032726 locus=Lus10032726.g ID=Lus10032726.BGIv1.0 annot-version=v1.0 MASTTSFPFLLIIFLGYINYIAHATVFTLLNQCTYTIWPGTLSGNGAALLGDGGFQLSPSASAQFPAPPGWSGRFWTRTGCSFDASGNGKCITGDCGGTL KCSGGGSPPVSLAEFTIAAGPGEKDFYDVSLVDGYNVGVGVKPIGGGALGDCRYAGCVTDLNAGCPPELRIVDSVGAVVACKSACEAFNAPEFCCTGDHA TPQTCSPSQYSMMFKNACPTAYSYAYDDASSTFTCTGSDYLITFCPNGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Lus10032726 [exp]	0	1
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	2.8	0.9700
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001752 [exp]	3.7	0.9736
AT1G06980			unknown protein		Lus10042244 [exp]	4.0	0.9676
AT4G28650			Leucine-rich repeat transmembr...		Lus10025943 [exp]	5.4	0.9425
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10041423 [exp]	6.0	0.9601
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	7.5	0.9625
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031377 [exp]	8.1	0.9698
AT1G06980			unknown protein		Lus10026407 [exp]	8.8	0.9578
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Lus10016151 [exp]	9.8	0.9509
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011746 [exp]	10.2	0.9668

Compare expression of checked genes

Lus10032726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.