Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003298 [exp] 85 / 7e-21 AT1G52950 48 / 7e-06 Nucleic acid-binding, OB-fold-like protein (.1) Lus10036312 [exp] 50 / 2e-08 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10001304 [exp] 45 / 9e-07 AT5G08020 40 / 0.006 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10022056 [exp] 38 / 0.0002 ND 36 / 0.002 Lus10022054 [exp] 38 / 0.0002 ND 36 / 0.002
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032730 pacid=23158946 polypeptide=Lus10032730 locus=Lus10032730.g ID=Lus10032730.BGIv1.0 annot-version=v1.0 ATGGTGATAGGAACGCTTCAAACACTCTACGCCGCCTTTGATTTCCGGGTGCTACAACGCTACAAACACTCTGCTTTCTGGTCTCTGTGGCCTGTGGCCT ATGCTCCTTTGTGGTCTATTGCCGCCCCTTACACGGCAATTTCAATCAAGGGGACCATTGTCGAGGGCTCTTCCCATCCGGCTCACACAGACATCCTTGC CTCGAGGCTGCCCGTTGGGTATGTGTATAAGATCAAGGAGTTTGGGTTGCAGATGCCTCGAAGAGCCTATCGAGCTGCCTCTTAA
AA sequence Show only first row Show all	>Lus10032730 pacid=23158946 polypeptide=Lus10032730 locus=Lus10032730.g ID=Lus10032730.BGIv1.0 annot-version=v1.0 MVIGTLQTLYAAFDFRVLQRYKHSAFWSLWPVAYAPLWSIAAPYTAISIKGTIVEGSSHPAHTDILASRLPVGYVYKIKEFGLQMPRRAYRAAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032730 [exp]	0	1
AT4G10925			Nuclear transport factor 2 (NT...		Lus10032407 [exp]	13.2	0.6854
AT1G04830			Ypt/Rab-GAP domain of gyp1p su...		Lus10017104 [exp]	19.5	0.6697
AT2G20320			DENN (AEX-3) domain-containing...		Lus10022854 [exp]	22.3	0.6861
AT4G02480			AAA-type ATPase family protein...		Lus10036347 [exp]	28.0	0.6828
AT1G60670			Protein of unknown function (D...		Lus10012911 [exp]	31.2	0.6842
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10009675 [exp]	33.4	0.6791
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10017748 [exp]	33.8	0.6795
AT1G04140			Transducin family protein / WD...		Lus10000495 [exp]	44.6	0.6719
AT4G34310			alpha/beta-Hydrolases superfam...		Lus10021747 [exp]	48.5	0.6466
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10016634 [exp]	51.6	0.6562

Compare expression of checked genes

Lus10032730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.