Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025316 [exp] 84 / 2e-19 ND / Lus10022170 [exp] 82 / 8e-19 ND / Lus10015042 [exp] 83 / 1e-18 ND / Lus10002071 [exp] 81 / 8e-18 ND / Lus10021684 [exp] 79 / 4e-17 ND / Lus10024215 [exp] 78 / 9e-17 ND / Lus10021528 [exp] 77 / 1e-16 ND / Lus10003781 [exp] 77 / 2e-16 ND / Lus10010604 [exp] 76 / 4e-16 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032733 pacid=23159025 polypeptide=Lus10032733 locus=Lus10032733.g ID=Lus10032733.BGIv1.0 annot-version=v1.0 ATGAGTTCTTTCATTCCTCAAAACTATATGGTCTACACTAATGATCGTATAAGGAGTGCTGCTCACGTTGTGAGGTATGTTAAACATTTTGCTAATCGTC CTATTCGCACACGAGTGGTTGTTGATCCTTCTATTTTCAACTCTTTTGGTTTGAATACTTCTCCAATGATTGAGAATCCGGGATGGACCTCTCCTCTCAG TAATCGTCCGCAAACCTTCTTCCCAGATGTTGTAGCACAATTTTATGCTAATATTCAACTTGACGGTAACATTTTACTGTGGAATGTTCAACACGATTGT TTCAGGGCGAAAGATTTTTGTCTGTCCCAGGATCCCAACAGAATGCTCGCAAACCCTCGTCTTACTGGTGCTCTGCCCTTTGCTCCAGAAATCTCTACTC TTTTGGTCTGTCTTGGATTTCCTCTCTTTGGTGGATTCTACTCCGCCTCGCCCTTGGATGTTCTGGATCCTCATACTATTTTTCAAGAAATTGGGGGCAT TCCTCGTCCGGAGAATGCTTTAGGGGGAGAAAATGATGTCGACTATACTGCGTCTCAAATCAAATCTGAAAAGAAGTCTGAAAGTCTTTTTAAGGAAGTT ATTGATGCTCTTGCTGAAAGACTGAATTGTCATCTGAATATTTGA
AA sequence Show only first row Show all	>Lus10032733 pacid=23159025 polypeptide=Lus10032733 locus=Lus10032733.g ID=Lus10032733.BGIv1.0 annot-version=v1.0 MSSFIPQNYMVYTNDRIRSAAHVVRYVKHFANRPIRTRVVVDPSIFNSFGLNTSPMIENPGWTSPLSNRPQTFFPDVVAQFYANIQLDGNILLWNVQHDC FRAKDFCLSQDPNRMLANPRLTGALPFAPEISTLLVCLGFPLFGGFYSASPLDVLDPHTIFQEIGGIPRPENALGGENDVDYTASQIKSEKKSESLFKEV IDALAERLNCHLNI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032733 [exp]	0	1
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Lus10003366 [exp]	2.8	0.7028
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Lus10042395 [exp]	5.2	0.7206
AT1G05660			Pectin lyase-like superfamily ...		Lus10010584 [exp]	11.6	0.6723
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10028845 [exp]	11.7	0.6784
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Lus10033764 [exp]	12.0	0.6295
AT2G39040			Peroxidase superfamily protein...		Lus10021957 [exp]	15.0	0.6350
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10017904 [exp]	16.6	0.6932
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Lus10040889 [exp]	17.1	0.6517
AT4G09160			SEC14 cytosolic factor family ...		Lus10025540 [exp]	18.1	0.5427
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022104 [exp]	19.7	0.6152

Compare expression of checked genes

Lus10032733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.