Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50770 114 / 1e-31 CML41 calmodulin-like 41 (.1) AT1G76640 82 / 7e-20 Calcium-binding EF-hand family protein (.1) AT1G76650 81 / 5e-19 CML38 calmodulin-like 38 (.1.2.3) AT1G24620 72 / 7e-16 EF hand calcium-binding protein family (.1) AT1G18210 71 / 2e-15 Calcium-binding EF-hand family protein (.1.2) AT3G01830 67 / 3e-14 Calcium-binding EF-hand family protein (.1.2) AT1G73630 66 / 1e-13 EF hand calcium-binding protein family (.1) AT5G42380 62 / 6e-12 CML39, CML37 CALMODULIN LIKE 39, calmodulin like 37 (.1) AT1G05990 60 / 2e-11 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT4G12860 59 / 6e-11 UNE14 unfertilized embryo sac 14, EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022343 [exp] 96 / 3e-25 AT1G76650 132 / 7e-40 calmodulin-like 38 (.1.2.3) Lus10018012 [exp] 76 / 3e-17 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10018845 [exp] 77 / 2e-16 AT3G12340 114 / 3e-29 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10009059 [exp] 72 / 1e-15 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10031345 [exp] 72 / 1e-15 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2) Lus10004330 [exp] 71 / 1e-15 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10028913 [exp] 71 / 2e-15 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10027081 [exp] 59 / 8e-11 AT1G18210 131 / 2e-39 Calcium-binding EF-hand family protein (.1.2) Lus10014050 [exp] 59 / 1e-10 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G128100 [exp] 124 / 8e-36 AT3G50770 188 / 7e-61 calmodulin-like 41 (.1) Potri.007G031900 [exp] 120 / 2e-34 AT3G50770 147 / 1e-44 calmodulin-like 41 (.1) Potri.001G332900 [exp] 99 / 2e-26 AT1G76650 115 / 2e-33 calmodulin-like 38 (.1.2.3) Potri.005G259900 [exp] 99 / 6e-26 AT1G76650 156 / 2e-48 calmodulin-like 38 (.1.2.3) Potri.002G001400 [exp] 95 / 2e-24 AT5G42380 160 / 6e-50 CALMODULIN LIKE 39, calmodulin like 37 (.1) Potri.015G093800 [exp] 80 / 3e-19 AT1G76650 101 / 8e-28 calmodulin-like 38 (.1.2.3) Potri.002G132500 [exp] 80 / 3e-19 AT5G42380 98 / 1e-26 CALMODULIN LIKE 39, calmodulin like 37 (.1) Potri.015G039500 [exp] 79 / 2e-18 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.012G048200 [exp] 77 / 1e-17 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.008G134300 [exp] 67 / 1e-13 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10032734 pacid=23158941 polypeptide=Lus10032734 locus=Lus10032734.g ID=Lus10032734.BGIv1.0 annot-version=v1.0 ATGGCGACTTCGCCTGCCGTTGAGTCACCGACGAAAAGGTCAACAAACAAAGGTTTCAGGATAAGCCTTCCAATTCTCCGGTCAGTCAACTCCAAATCCC TAAATTCCTCTCCTTCCGCTTCCCCTGTCGTCCAGCACGACCAAACTCCTTTGAAGAGCAGCGCCACCGAAAAGAAGAAGGAGGAGGCGTTACTGAGAGT GTTCCGCCACTTCGACAGCAACGGCGACGGGAAAATATCGGGGGAAGAGCTAGGGATGTATTTCTCGTCGACTACAGGGGACGAGATGTCGAAGGAGGAC GCAGAGAAGGTGATTAGGGATTTCGACGGCGATGGCGACGGCTTACTGGAGTTCGGAGACTTCGTGCGGCTGGTGGAAGGGGACGACGGCAAGGAGTTGG ACGGAGATCTGAAGCGGGCGTTCCACATGTTTGAGGAGGATAAGGGGGATGGATGTATTACACCCAGAGGGCTGCAGAGGATGTTGAATCGTTTAGGGGA TCGCAAGTCCCTGGACGAGTGCTCGGCCATGATTCAGCCGTTTGATCTCGATGGGAATGGTGTGCTTGATTTTCACGAGTTTCGGAATATGATGAACTGA
AA sequence Show only first row Show all	>Lus10032734 pacid=23158941 polypeptide=Lus10032734 locus=Lus10032734.g ID=Lus10032734.BGIv1.0 annot-version=v1.0 MATSPAVESPTKRSTNKGFRISLPILRSVNSKSLNSSPSASPVVQHDQTPLKSSATEKKKEEALLRVFRHFDSNGDGKISGEELGMYFSSTTGDEMSKED AEKVIRDFDGDGDGLLEFGDFVRLVEGDDGKELDGDLKRAFHMFEEDKGDGCITPRGLQRMLNRLGDRKSLDECSAMIQPFDLDGNGVLDFHEFRNMMN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50770		CML41	calmodulin-like 41 (.1)		Lus10032734 [exp]	0	1
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10033336 [exp]	1.7	0.9226
AT4G24000		ATCSLG2	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032416 [exp]	2.4	0.9210
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032415 [exp]	5.5	0.9190
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10042494 [exp]	6.9	0.8929
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10038536 [exp]	12.2	0.8844
AT1G70505			unknown protein		Lus10030895 [exp]	13.0	0.9066
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10000411 [exp]	22.0	0.9053
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014615 [exp]	26.8	0.8885
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10007631 [exp]	31.1	0.8961
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Lus10032006 [exp]	31.2	0.9102

Compare expression of checked genes

Lus10032734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.