Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23770 253 / 4e-75 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G33580 191 / 6e-52 Protein kinase superfamily protein (.1) AT2G30730 153 / 4e-41 Protein kinase superfamily protein (.1) AT2G30740 151 / 3e-40 Protein kinase superfamily protein (.1) AT3G21630 156 / 4e-40 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT3G58690 148 / 1e-38 Protein kinase superfamily protein (.1) AT1G06700 147 / 1e-38 Protein kinase superfamily protein (.1.2) AT3G59350 146 / 2e-38 Protein kinase superfamily protein (.1.2.3) AT5G06740 149 / 1e-37 Concanavalin A-like lectin protein kinase family protein (.1) AT1G49730 149 / 1e-37 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018788 [exp] 1066 / 0 AT2G23770 312 / 3e-97 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016299 [exp] 654 / 0 AT2G23770 368 / 3e-119 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022488 [exp] 382 / 9e-124 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016794 [exp] 240 / 3e-73 AT2G23770 219 / 2e-66 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008586 [exp] 224 / 1e-63 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10000577 [exp] 211 / 2e-59 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10019661 [exp] 210 / 9e-59 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10039406 [exp] 188 / 1e-52 AT2G33580 229 / 4e-68 Protein kinase superfamily protein (.1) Lus10021889 [exp] 190 / 2e-52 AT2G23770 256 / 2e-77 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G040000 [exp] 516 / 1e-176 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128300 [exp] 409 / 1e-134 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 299 / 5e-92 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.010G078700 [exp] 241 / 1e-70 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 237 / 4e-69 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.005G259600 [exp] 218 / 6e-62 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.007G032100 [exp] 218 / 2e-61 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G332800 [exp] 182 / 8e-49 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.002G226600 [exp] 169 / 1e-44 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.014G156400 [exp] 167 / 6e-44 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10032735 pacid=23158933 polypeptide=Lus10032735 locus=Lus10032735.g ID=Lus10032735.BGIv1.0 annot-version=v1.0 ATGATCAACAATTTCTTTACATTTCTAATCCTATCCATCGCCATCCTATTCCTGAACCCGCCTCCGTCCACCGCCACTCAGAACTACTCCGGCAGCTTAG CACTTGACTGCGACGTCGCCGACCAACTCTCCCCCTCCTCCGCTTTCCTCTACACCTGCACCGCTGCCGCCCTTGCTAGTAGTAGTAGTACCACTTCCTC CTCCTGCCAGTCTTTCCTCATCTTCAGATCCTCACTCCTTCACAGCTCCGTAGCCGATATCTCCGCCGTTACTTCTTCGGACTCCGCCACGCTTGCCCGT CTTAACGGCGTCCTCAATCCTCTCTCCAAATTCGTGGCCGGCCAAGACGTAATCGTCCCCGTCAAATGCTCTTGCTCCTCCGGACATAATAATAGCAGTT ACTCGTACTACCGAGCCAACACCAGTTTCACTCTGACCCCAACCCAGGGGACTTACTACATTGTGGCATCGGATGTATTCAGCGGATTGGCCACTTGTGC CGCGATTAAGCGCGACAATCCGTGGCCATATGCCGGATTGAAACCGGGTATGAAAATCCAGGTCCCTCTCCGATGTGCCTGTCCGGCGAACGATCAGGCT TCTAGCGGAGTGAATTATCTCCTGACGTATCCAATCTCGTCGGACGACAGTCTCAGGGAAGTTGCTGAGAGGTTCAATGTAACAGAGAAGAGCATACTGG AAGCGAATAATCTGATGAGAAACGAAACCGGGGTTGTAAAATTGATTTCAGGTACCACAATTTTGATTCCCCTTTTAGGGCTTCCCTCGAGTACCATGGC CAAAATTCACTACAAGGTTCCTGGAATCGGATCTCCGCCGGGGGGCGGACGAAGCAAGAGATCAAAGGTGAAGATACTCGAGCTCTCCGGCCTTGCGGCT GCCTGCTTCTTGTTGCTACTGAGCATAATTTCGGGAGCGGTGTTTGTTGTTCGAGCAAAGAGGAGGAAGAAAATAAGGAAGATGAAGAAGGATGTTGGTG AAATGAAACAAGAGAAGGTTCAAGAAGATCTTCGAGTTGAGATAGCGAGCTGCGAGAGAGCTTTGACAGTGTTTGGGATTGATGAGGTGAAGAAGGGGAC TGGGAATTTCAGCCCCAGGAACAAAATCAAGGGCTCTGTTTATTCAGGAGTGTTTGGTGGGAAGGTATTGGCTGTGAAGAAGATGAGTAGAGATATTGAT ATATCACAGGAGGTCAATATTCTGATGAGGATTAACCATTTCAACGTCATAAAGCTCCATGGTGTTTGTGATGACTTGCAGTCTTTCTACCTTGTTTCTG AATACATGGAATTTGGTTGTTTAAAAGAATGGTTAAGAATAGACAACAGGAAAAAGGATGGTGGGAAAGAAGAAGAAGAAGAGAATGGAGGGAAGTGGGA GACAAGGGTTAAGATTGGTCTAGACATTGCCAATGGCCTTCACTATCTCCACAACTTCACTGAGCCAGCTTATGTCCATCAGGACATCAAGAGCAGCAAC GTCTTGCTAAATAGTGATCTTAGGGCCAAGATCACCAATTTCAGCCTCGCAAAGTCTGCCGCTGCCAGGGACTCAGCAGCTAACACGGTACACTTGATTG GGACACGAGGGTACATGGCTCCAGAGTACATAGAGACCGGAGAGGTTACCCCTAAGGTCGATGTCTATGCCTTTGGAGTCGTGCTGTTAGAGCTGATCAC TGGGAAAAAAGCTGTATTGGTTTTGGGGGATGGGAAGGAGACTCTGCTGTCGACTACAATGGTTGCTTTGATGGAGAAGGGAAGTTATGAATCTGAACTG GGTTCGTACGTTGATCCTCGTTTGGGAGAAGCTGGGATGGAAATGGGGCTTGCTCTGTTTAAAGTGAGCCTGGCTTGCCTGAGAAGGGAAGCAGAATGCA GGCCGAGCATGGAGGAGGTAGTCTCCAGCCTGGTCAAAATCCTGACAGATTTCAAGAGATCAAAACTATTGAGTGATGAATCTATTACTGATCAGTCAGC TCCGCTTCGAAGTTATGGGAATGGTTGGACTGTTGAAACTGCTTCGTGGTGA
AA sequence Show only first row Show all	>Lus10032735 pacid=23158933 polypeptide=Lus10032735 locus=Lus10032735.g ID=Lus10032735.BGIv1.0 annot-version=v1.0 MINNFFTFLILSIAILFLNPPPSTATQNYSGSLALDCDVADQLSPSSAFLYTCTAAALASSSSTTSSSCQSFLIFRSSLLHSSVADISAVTSSDSATLAR LNGVLNPLSKFVAGQDVIVPVKCSCSSGHNNSSYSYYRANTSFTLTPTQGTYYIVASDVFSGLATCAAIKRDNPWPYAGLKPGMKIQVPLRCACPANDQA SSGVNYLLTYPISSDDSLREVAERFNVTEKSILEANNLMRNETGVVKLISGTTILIPLLGLPSSTMAKIHYKVPGIGSPPGGGRSKRSKVKILELSGLAA ACFLLLLSIISGAVFVVRAKRRKKIRKMKKDVGEMKQEKVQEDLRVEIASCERALTVFGIDEVKKGTGNFSPRNKIKGSVYSGVFGGKVLAVKKMSRDID ISQEVNILMRINHFNVIKLHGVCDDLQSFYLVSEYMEFGCLKEWLRIDNRKKDGGKEEEEENGGKWETRVKIGLDIANGLHYLHNFTEPAYVHQDIKSSN VLLNSDLRAKITNFSLAKSAAARDSAANTVHLIGTRGYMAPEYIETGEVTPKVDVYAFGVVLLELITGKKAVLVLGDGKETLLSTTMVALMEKGSYESEL GSYVDPRLGEAGMEMGLALFKVSLACLRREAECRPSMEEVVSSLVKILTDFKRSKLLSDESITDQSAPLRSYGNGWTVETASW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23770			protein kinase family protein ...		Lus10032735 [exp]	0	1
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029463 [exp]	22.4	0.6384
AT1G30755			Protein of unknown function (D...		Lus10013553 [exp]	36.6	0.6175
AT5G41720			unknown protein		Lus10006473 [exp]	39.7	0.6422
					Lus10008536 [exp]	44.2	0.6261
AT3G45940			Glycosyl hydrolases family 31 ...		Lus10031003 [exp]	45.0	0.6086
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10012029 [exp]	45.2	0.5487
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10000839 [exp]	57.2	0.6220
AT4G37710			VQ motif-containing protein (....		Lus10019270 [exp]	64.2	0.6229
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10009145 [exp]	75.3	0.5189
AT4G10955			alpha/beta-Hydrolases superfam...		Lus10023072 [exp]	93.2	0.5933

Compare expression of checked genes

Lus10032735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.