Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19270 626 / 0 DA1 DA1 (.1) AT4G36860 564 / 0 DAR1 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) AT2G39830 474 / 2e-164 LRD3, DAR2 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) AT5G66610 352 / 6e-116 DAR7 DA1-related protein 7 (.1.2) AT5G66620 347 / 5e-113 DAR6 DA1-related protein 6 (.1) AT5G66630 303 / 3e-95 DAR5 DA1-related protein 5 (.1) AT5G17890 309 / 3e-93 CHS3, DAR4 CHILLING SENSITIVE 3, DA1-related protein 4 (.1) AT5G66640 283 / 1e-90 DAR3 DA1-related protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018789 [exp] 837 / 0 AT1G19270 575 / 0.0 DA1 (.1) Lus10010033 [exp] 773 / 0 AT1G19270 657 / 0.0 DA1 (.1) Lus10016298 [exp] 769 / 0 AT1G19270 646 / 0.0 DA1 (.1) Lus10022486 [exp] 613 / 0 AT4G36860 679 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10016791 [exp] 593 / 0 AT4G36860 669 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10040258 [exp] 473 / 2e-160 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10004690 [exp] 385 / 3e-129 AT2G39830 560 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10000138 [exp] 233 / 5e-75 AT4G36860 203 / 2e-63 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G132700 [exp] 739 / 0 AT1G19270 669 / 0.0 DA1 (.1) Potri.014G039900 [exp] 738 / 0 AT1G19270 654 / 0.0 DA1 (.1) Potri.005G128900 [exp] 607 / 0 AT4G36860 696 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.007G032500 [exp] 602 / 0 AT4G36860 675 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.005G128800 [exp] 585 / 0 AT4G36860 662 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.010G197500 [exp] 478 / 7e-166 AT2G39830 688 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Potri.T124504 [exp] 178 / 7e-52 AT1G19270 182 / 3e-53 DA1 (.1) Potri.009G111446 [exp] 91 / 1e-21 AT2G39830 92 / 7e-23 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF12315 [flax] [poplar] DA1-like Protein DA1 CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00412 [flax] [poplar] LIM LIM domain
Representative CDS sequence Show only first row Show all	>Lus10032736 pacid=23158957 polypeptide=Lus10032736 locus=Lus10032736.g ID=Lus10032736.BGIv1.0 annot-version=v1.0 ATGCATGATCAGGTAGCAATACGGATGATGGGTTGGCTTAGTAACATCTTTAAAGGGTCCAACCATAGCATTTCGGAAGGGCATTACCGGAACAATTATG GTGAAAGCCCTAATCTACATGCACCATCTGCTTCACAGGATGTATGGGTGGATCATGACAGTGAAGAGATAGATCGTGCTATTGCACTCTCACTTTTGGA GGGTCAGCAGGGGAAACCTGTGATTGATAGCGAGACTCAACTACAAGAAGATGAACAACTCGCTAGAGCTTTACATGAAAGCTTAAATGTTCAACCCCTC CCTCCCCCTCGATGTAGCAATCCAAATGCATATCCAGGAAATGCATATCACCAACCAGCCCCACTCCATTTTCCGACAGGGTTCAGGATCTGTGCTGGTT GCAATCATGAAATTGGAGCTGGAAGATTTCTACATTGTCTAAATGCATACTGGCACCTAGAATGTTTCCGTTGCCATGCGTGCAATATACCAATTTCTGA TTATGAGTTCTCAATGTCTGGGAATTACCCCTATCACAAAACTTGCTACAAGGACCGCTTCCATCCCAAATGTGATGTCTGCAAACACTTTATTCCAACG AACCTGGATGGACTTATTGAATATAGAGCTCATCCATTTTGGAACCAGAAATACTGCCCTACTCACGAATATGATGGTACCCCAAGATGTTGCAGCTGCG AGAGAATGGAGCCTAAAGATACAGGATATGTTCCTCTTAACGATGGCCGGAAGCTCTGTCTGGAGTGCCTGGATTCGACAGTGATGGATACGAGCCAATG CCAGCCCCTTTACATGGACATACGGCAATTTTACGAAAGCTTAAATATGAAGGTGGAGCAGTATGTTCCATTACTACTTGTAGAGAGACAAGCACTAAAT GAAGCCAGGGAGGGAGAAAAGAATGGCCATTATCACATGCCAGAAACAAGAGGACTATGCCTTTCTGAGGAACAAACAATCAGCACGGTATTACGGAGAC CGAGGTTTGGGGGAGGGCAACGGTCCACGAACATGATGACGGAACCTTACAAATTGAGTCGCCGATGTGATGTCACTGCCATTCTTATATTATATGGTCT CCCAAGGTTGCTTACCGGATCAATCCTCGCTCATGAGATGATGCATGCCTGGATGCGACTTAAAGGTTACCAATCTCTGAGTCAAGACGTTGAAGAGGGG ATTTGCCAGGTCCTGGCACACATGTGGTTAGACACACAACTAAACTTTGCATCCTCGTCGTCAGTTGACAGTTCTGGACCTCCGTTCCAGAAAAAACTTG GGGCTTTCTTCAAGCATCAAATTGAGTCTGACAGTTCTCCTGTGTACGGAGATGGATTCAGAGCCGGTCAGCAAGCCGTTGGTAAATATGGGCTCCTGAG AACTCTTGAACATATTCAAATGACTGGGAGGTTTCCCTTCTGA
AA sequence Show only first row Show all	>Lus10032736 pacid=23158957 polypeptide=Lus10032736 locus=Lus10032736.g ID=Lus10032736.BGIv1.0 annot-version=v1.0 MHDQVAIRMMGWLSNIFKGSNHSISEGHYRNNYGESPNLHAPSASQDVWVDHDSEEIDRAIALSLLEGQQGKPVIDSETQLQEDEQLARALHESLNVQPL PPPRCSNPNAYPGNAYHQPAPLHFPTGFRICAGCNHEIGAGRFLHCLNAYWHLECFRCHACNIPISDYEFSMSGNYPYHKTCYKDRFHPKCDVCKHFIPT NLDGLIEYRAHPFWNQKYCPTHEYDGTPRCCSCERMEPKDTGYVPLNDGRKLCLECLDSTVMDTSQCQPLYMDIRQFYESLNMKVEQYVPLLLVERQALN EAREGEKNGHYHMPETRGLCLSEEQTISTVLRRPRFGGGQRSTNMMTEPYKLSRRCDVTAILILYGLPRLLTGSILAHEMMHAWMRLKGYQSLSQDVEEG ICQVLAHMWLDTQLNFASSSSVDSSGPPFQKKLGAFFKHQIESDSSPVYGDGFRAGQQAVGKYGLLRTLEHIQMTGRFPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19270		DA1	DA1 (.1)		Lus10032736 [exp]	0	1
AT5G05490		SYN1 BP5, SYN1 ...	SYNAPTIC 1, DETERMINATE, INFER...		Lus10022711 [exp]	4.5	0.7972
AT3G28580			P-loop containing nucleoside t...		Lus10014497 [exp]	5.7	0.8342
					Lus10005948 [exp]	5.9	0.7877
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10040795 [exp]	7.2	0.8002
AT2G23090			Uncharacterised protein family...		Lus10011535 [exp]	8.1	0.8065
AT1G43900			Protein phosphatase 2C family ...		Lus10042775 [exp]	8.5	0.7815
AT4G35310		CPK5, ATCPK5	calmodulin-domain protein kina...		Lus10022986 [exp]	10.6	0.7712
AT1G14560			Mitochondrial substrate carrie...		Lus10013527 [exp]	13.2	0.7213
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10002556 [exp]	16.2	0.7497
AT3G30390			Transmembrane amino acid trans...		Lus10007716 [exp]	22.6	0.7490

Compare expression of checked genes

Lus10032736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.