Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47550 1555 / 0 SEC3A exocyst complex component sec3A (.1.2) AT1G47560 1505 / 0 SEC3B exocyst complex component sec3B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015090 [exp] 1737 / 0 AT1G47550 1605 / 0.0 exocyst complex component sec3A (.1.2) Lus10001022 [exp] 908 / 0 AT1G47550 1300 / 0.0 exocyst complex component sec3A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G039100 [exp] 1570 / 0 AT1G47550 1534 / 0.0 exocyst complex component sec3A (.1.2) Potri.002G131400 [exp] 1550 / 0 AT1G47550 1516 / 0.0 exocyst complex component sec3A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF09763 [flax] [poplar] Sec3_C Exocyst complex component Sec3
Representative CDS sequence Show only first row Show all	>Lus10032737 pacid=23158973 polypeptide=Lus10032737 locus=Lus10032737.g ID=Lus10032737.BGIv1.0 annot-version=v1.0 ATGGCGAAGTCCAGCGTCGACGATTCGGAACTACGCAAGGCCTGCGAAGCAGCAATTGAAAGCACCAAGCAGAAGGTCGTGATGTCGATCCGTGTCGCCA AGAGCCGAGGTGTTTGGGGCAAATCCGGCAAATTAGGCCGGCAGATGGCTAAACCCAGGGTTCTTGCTCTCTCCACTAAAGAAAAGGGTTCGCGCACAAA AGCATTTCTTAGAGTAATGAAGTACTCCACTGGTGGAATCCTTGAGCCAGCAAAGTTGTATAAGCTCAAGCATCTTTCAAAGGTGGAGGTTGTAGCTAAC GATCCTAGTGGATGTACATTTACCTTGGGATTTGATAATCTCAGAAGCCAGAGTGTTGCTCCTCCCCAATGGACAATGCGCAATGTCGATGATAGGAACC GTCTTTTGTTTTGTATCTTAAATATCTCTAAAGAAGTTCTTGGCCGTCTTCCTAAAGTTGTTGGCTTAGATGTTGTAGAAATGGCTCTATGGGCTAAGGA AAATACAGGTACCGTCACAAAGCAAAGGGCACAACATGATGGCCCTGTTGCTGCTCACGTGGATGAAGGTGACATGGAAGTGACTGTTGAAAAAGAACTC GTTTCCCAAGCAGAGGAAGAAGACATGGAAGCTCTTCTCGACACTTATGTCATGGGCATTGGGGAAGCTGAGGCATTTTCTGAAAGATTGAAGCGCGAGC TTCTTGCTCTGGAAGCGGCAAATGTTCATGCCATCTTGGAAAGTGAACCTTTGATAGATCAAGTTTTGCAAGGGCTTGCTGTAGCAACAAGTTGTGTTGA TGATATGGACGAATGGTTAGGCATCTTTAATGTGAAACTTAGGCACATGCGGCAAGACATTGAATCAATAGAAATCCGCAACAACACATTGGAGATGCAG TCTGTTAATAATAAAGCTCTTATTGAAGAACTTGATAAGCTCGTCGAACGGCTGCGTGTCCCATCTGAATATGCAGCATGTTTGACAGGGGGTACATTTG ATGAAGACCGCATGCTTCAAAACATTGAAGCATGTGAGTGGTTGACTCGTGCTCTCCATGGTTTAGAAGTACCTAATTTGGATCTCATCTATGCTAATAT GCGTGCTATCCGTGAGAAGCGAGCTGAACTCGAGAAACTTAAAGCTACATTTGTGAGACGCGCTTCTGAGTTTCTAAGAAACTACTTCGCGAGTTTGGTT GATTTCATGATTAGTGACAAGAGTTACTTCTCTCAGCGGGGACAACTAAAAAGGCCAGATCATGCTGATTTGAGATACAAATGTAGGACATATGCTCGTC TTCTTCAACATTTAAAGAGTCTTGATAAGAATTGCTTGGGTCCGTTGAGAAAAGCATATTGTAGCTCCTTAAACTTGCTTCTTCGGCGGGAGGCACGTGA ATTTGCTAATGAGCTTCGTGCCAGTACCAAAGCATCAAGAAATCCCACTGTGTGGCTTGAACCATCTACAGGCTCTAACCAAAATGCACAGACTTCTGAT ACTTCAGCAGTTTCGGAGGCTTATGCTAAAATGCTCACCATCTTTATCCCACTTCTTGTCGATGAGAGTTCCTTTTTTGCACACTTCATGTGCTTTGAGG TCCCTGCGCTTGTTCCACCAGGAGGTGTTGCTAATGGAAATAAAGGTGGAAGTTACGACGATGATGACGACGATCTGGGAATCATGGACATTGATGACAA TGATGGAAAAGCTGGAAAAACCACTGCAGATCTGGCTGCATTAAATGAATCTCTTCAGGATTTACTTGATGGAATCCAAGAGGACTTTTATGCTGTTGTC GATTGGGCGTACAAGATTGATCCTCTACGCTGCATATCAATGCATGGGATAACCGAACGTTATCTATCTGGTCAGAAAGCTGATGCAGCCGGATTTGTGC GTCTCTTGCTTGGTGATCTGGAGTCACGAGTTTCCATGCAGTTCAGTCGTTTTGTTGATGAAGCTTGCCACCAGATAGAGAGGAACGAGCGTAATGTGCG GCAGATGGGGGTCTTATCATACATCCCAAGATTTGCTACTCTGGCTACTCGAATGGAGCAGTACATCCAGGGGCAGTCTAGGGATTTAGTTGATCAGGCA TACACTAAATTTGTGAGCATAATGTTTGCGACATTTGAGAAGATTGCACAAACAGATCCAAAATATTCTGACATATACCTTTTGGAGAACTATGCAGCAT TTCAAAACAGTTTATACGACCTAGCCAATGTTGTTCCAACTTTAGCCAAATTTTATCACCAGGCAAGTGAAGCTTATGAGCAAGCTTGTACACGCCATAT CAGCATGATTATTTACTATCAATTTGAACGGCTTTTCCAGTTTGCTCGCAGGATTGAGGATCTGATGTACACTATAACTCCAGAGGAGATTCCTTTCCAG CTTGGATTATCGAAGATGGATCTACGAAAGATGATAAAATATAGTCTGTCAGGAGTTGACAAGTCTATAACCGCAATGTACAAGAAGTTGCAGAAGAACT TGGCCTCGGATGAGCTATTGCCTTCTTTGTGGGACAAATGCAAGAAGGAGTTCCAGGACAAGTATGAAAGTTTTGTACAACTGGTTGCGAAAATCTACCC CAATGAGACAATCCCTTCCGCTACAGAAATGAGAGAACTCTTGGCTTCCATGTAA
AA sequence Show only first row Show all	>Lus10032737 pacid=23158973 polypeptide=Lus10032737 locus=Lus10032737.g ID=Lus10032737.BGIv1.0 annot-version=v1.0 MAKSSVDDSELRKACEAAIESTKQKVVMSIRVAKSRGVWGKSGKLGRQMAKPRVLALSTKEKGSRTKAFLRVMKYSTGGILEPAKLYKLKHLSKVEVVAN DPSGCTFTLGFDNLRSQSVAPPQWTMRNVDDRNRLLFCILNISKEVLGRLPKVVGLDVVEMALWAKENTGTVTKQRAQHDGPVAAHVDEGDMEVTVEKEL VSQAEEEDMEALLDTYVMGIGEAEAFSERLKRELLALEAANVHAILESEPLIDQVLQGLAVATSCVDDMDEWLGIFNVKLRHMRQDIESIEIRNNTLEMQ SVNNKALIEELDKLVERLRVPSEYAACLTGGTFDEDRMLQNIEACEWLTRALHGLEVPNLDLIYANMRAIREKRAELEKLKATFVRRASEFLRNYFASLV DFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKASRNPTVWLEPSTGSNQNAQTSD TSAVSEAYAKMLTIFIPLLVDESSFFAHFMCFEVPALVPPGGVANGNKGGSYDDDDDDLGIMDIDDNDGKAGKTTADLAALNESLQDLLDGIQEDFYAVV DWAYKIDPLRCISMHGITERYLSGQKADAAGFVRLLLGDLESRVSMQFSRFVDEACHQIERNERNVRQMGVLSYIPRFATLATRMEQYIQGQSRDLVDQA YTKFVSIMFATFEKIAQTDPKYSDIYLLENYAAFQNSLYDLANVVPTLAKFYHQASEAYEQACTRHISMIIYYQFERLFQFARRIEDLMYTITPEEIPFQ LGLSKMDLRKMIKYSLSGVDKSITAMYKKLQKNLASDELLPSLWDKCKKEFQDKYESFVQLVAKIYPNETIPSATEMRELLASM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10032737 [exp]	0	1
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10015090 [exp]	1.4	0.9024
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10001406 [exp]	1.4	0.8820
AT4G24900			unknown protein		Lus10022913 [exp]	1.7	0.8413
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10010858 [exp]	6.2	0.7662
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10041666 [exp]	7.1	0.8216
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10003676 [exp]	9.4	0.7853
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	10.2	0.8176
AT2G06005		FIP1	FRIGIDA interacting protein 1 ...		Lus10021558 [exp]	12.1	0.7853
AT5G47900			Protein of unknown function (D...		Lus10036333 [exp]	12.2	0.8262
AT4G26410			Uncharacterised conserved prot...		Lus10007935 [exp]	13.2	0.7525

Compare expression of checked genes

Lus10032737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.