Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48460 235 / 7e-75 unknown protein AT5G63040 89 / 2e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039957 [exp] 108 / 2e-26 AT5G63040 323 / 5e-109 unknown protein Lus10027687 [exp] 107 / 5e-26 AT5G63040 321 / 6e-108 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G038800 [exp] 264 / 6e-86 AT1G48460 343 / 2e-117 unknown protein Potri.012G088700 [exp] 128 / 1e-33 AT5G63040 344 / 4e-117 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032738 pacid=23159038 polypeptide=Lus10032738 locus=Lus10032738.g ID=Lus10032738.BGIv1.0 annot-version=v1.0 ATGGAATTGCAATCCGTTTGTGGAGGAAGGGTTCCCATTTCCATCCTCCGGTTGACAACTCCCTCCCACTCGCCTTATCGAATTGGTTCATCCATCCAAT TGGGGGCCAGAAGAGGTGGAGTAGGAAGCCTCTCCAATTGTACCGTCTTTGCTAATTCGAAGAGACTTGGCTTACTTAGCCTGAAGAGAGATTTTGTAAT ACGTGCTTCTAGCAGCTCCAAATCCAGTGATGCCGCCGACATAAATTTGAAGCTTTTGGATGAGGAAATATCTTTGCCGCGTGTTACTGGCAGCTTGTAT GATTTGGAACCGTCTGGAGGGTATTCAGGTTCAGTATCGTTTTGTGGATTGAGTCATGATAATGTGGAAGAATGGAGAAGAGTTTTGAAAGCAGAATCAG CACACTCTTTGCTTTGGACCGTGGGGCCAGTTGTGTTGATATCGTCCTTAATTGTTCCCCAATTCTTCGTTGGTCAGGCAATCAATCGACTTATTAAGGA TGCAGTTGTTGCAGAGATTGTGCGTTCAGTGTGCTTCGAGGCAGTGTTCTATATAGGTTTATCAGTGTTTCTAGGGATAACTAACTGGATACAGAGGCCT TATATGAAACTTAGCTCGAAATGGTGGGGTAGACTTAACGGCCCTGAACTATACTTGACGATATGCTATGGTGCCATGTCGCTCAAGTTTCTGTTACCGA CTGTGTGGGCACTGGCAACTTGGTCAATGGTTGGTGTGGCAGCAGCAGTTGCTGTTATTCCATACATAGCTGGCTGCATTGCCCAGGCAGTGTTTGAACT CCAGCTTAGTATGCCTGGCTCGCCTTGTCTTCCTTTAGTCCCCATCATATTCGAGGTGTACAGACTATATCAATTGACAAAGGGTGCTTATTTCGTGGAG AAGCTACTGTTCACGATGAGAGGGCTACCAGAGTCTCCGCAGTTGATAGGAAGAGGGAACGGTTTGGTTTCATTGGTGGTGATGTTCCAGATACTTGCTG TGGCTAGCCTCTGGTCCTTGATCACATATCTCATGACACTCATACCTTCTAGGCCTGCTGCTGGGAGACACTGA
AA sequence Show only first row Show all	>Lus10032738 pacid=23159038 polypeptide=Lus10032738 locus=Lus10032738.g ID=Lus10032738.BGIv1.0 annot-version=v1.0 MELQSVCGGRVPISILRLTTPSHSPYRIGSSIQLGARRGGVGSLSNCTVFANSKRLGLLSLKRDFVIRASSSSKSSDAADINLKLLDEEISLPRVTGSLY DLEPSGGYSGSVSFCGLSHDNVEEWRRVLKAESAHSLLWTVGPVVLISSLIVPQFFVGQAINRLIKDAVVAEIVRSVCFEAVFYIGLSVFLGITNWIQRP YMKLSSKWWGRLNGPELYLTICYGAMSLKFLLPTVWALATWSMVGVAAAVAVIPYIAGCIAQAVFELQLSMPGSPCLPLVPIIFEVYRLYQLTKGAYFVE KLLFTMRGLPESPQLIGRGNGLVSLVVMFQILAVASLWSLITYLMTLIPSRPAAGRH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48460			unknown protein		Lus10032738 [exp]	0	1
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	4.9	0.9601
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Lus10041940 [exp]	5.1	0.9641
AT5G51100		FSD2	Fe superoxide dismutase 2 (.1)		Lus10026881 [exp]	8.2	0.9159
AT5G28750			Bacterial sec-independent tran...		Lus10015910 [exp]	9.7	0.8880
AT5G66470			RNA binding;GTP binding (.1)		Lus10014289 [exp]	9.8	0.9521
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10034302 [exp]	10.1	0.9546
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10022659 [exp]	11.0	0.9362
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10004319 [exp]	14.3	0.9345
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10028993 [exp]	15.0	0.8814
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10022110 [exp]	16.6	0.9413

Compare expression of checked genes

Lus10032738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.