Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42650 494 / 2e-172 CYP74A, AOS, DDE2 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) AT4G15440 271 / 1e-86 CYP74B2, HPL1 hydroperoxide lyase 1 (.1) AT3G10560 49 / 4e-06 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1) AT5G36130 46 / 7e-06 Cytochrome P450 superfamily protein (.1) AT5G04630 48 / 1e-05 CYP77A9 "cytochrome P450, family 77, subfamily A, polypeptide 9", cytochrome P450, family 77, subfamily A, polypeptide 9 (.1) AT1G13150 47 / 2e-05 CYP86C4 "cytochrome P450, family 86, subfamily C, polypeptide 4", cytochrome P450, family 86, subfamily C, polypeptide 4 (.1) AT5G09970 46 / 5e-05 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) AT3G10570 46 / 6e-05 CYP77A6 "cytochrome P450, family 77, subfamily A, polypeptide 6", cytochrome P450, family 77, subfamily A, polypeptide 6 (.1) AT3G26330 44 / 0.0001 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G04660 44 / 0.0002 CYP77A4 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018791 [exp] 659 / 0 AT5G42650 615 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10021015 [exp] 354 / 1e-117 AT5G42650 468 / 7e-162 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10021019 [exp] 334 / 1e-109 AT5G42650 474 / 6e-164 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Lus10031540 [exp] 278 / 6e-88 AT4G15440 467 / 3e-163 hydroperoxide lyase 1 (.1) Lus10030029 [exp] 269 / 2e-84 AT4G15440 481 / 3e-169 hydroperoxide lyase 1 (.1) Lus10030032 [exp] 257 / 4e-80 AT4G15440 423 / 2e-146 hydroperoxide lyase 1 (.1) Lus10030033 [exp] 256 / 1e-79 AT4G15440 442 / 7e-154 hydroperoxide lyase 1 (.1) Lus10035289 [exp] 254 / 4e-79 AT4G15440 443 / 2e-154 hydroperoxide lyase 1 (.1) Lus10015138 [exp] 237 / 2e-72 AT4G15440 378 / 2e-128 hydroperoxide lyase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G130700 [exp] 545 / 0 AT5G42650 693 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G038700 [exp] 527 / 0 AT5G42650 658 / 0.0 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148900 [exp] 388 / 4e-131 AT5G42650 499 / 2e-174 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G149000 [exp] 388 / 6e-131 AT5G42650 492 / 3e-171 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.009G109700 [exp] 379 / 3e-127 AT5G42650 479 / 2e-166 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.004G148600 [exp] 317 / 1e-103 AT5G42650 442 / 3e-152 DELAYED DEHISCENCE 2, CYTOCHROME P450 74A, allene oxide synthase (.1) Potri.014G155800 [exp] 283 / 3e-90 AT4G15440 507 / 6e-179 hydroperoxide lyase 1 (.1) Potri.011G155600 [exp] 55 / 6e-08 AT5G36110 388 / 4e-131 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.001G003100 [exp] 55 / 7e-08 AT5G36110 424 / 2e-145 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.018G134000 [exp] 54 / 1e-07 AT5G36110 559 / 0.0 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10032739 pacid=23158984 polypeptide=Lus10032739 locus=Lus10032739.g ID=Lus10032739.BGIv1.0 annot-version=v1.0 ATGAAACCACTCTCCCTATCCGCCAGATTCCTGGAGACTACGGTCTCCCTGGAATTGGACCTATCCAAGATCGTCTCGATTACTTCTACAACCAAGGCCG CGAAGAATTCTTCAAGTCAAGGCTCCAGAAATACAAGTCAACCGTCTACAGAGCCAACATGCCTCCTGGCCCATTCATCGCTTCCAATCCTCGTGTCATC GTCCTCCTCGACGCCAAGAGCTTTCCTGTACTCTTCGACATGTCCAAAGTCGAGAAGAAGGATCTCTTCACTGGAACTTACATGCCCTCTACTGAGCTCA CCGGCGGTTACCGTATCCTCTCCTGCGCTCCCCGGCGGTTACCGTATCCTCTCCTACCTCGACCCCTCCGAGCCCAATCACACCAAGCTCAAGCAACTCC TTTTCAATCTCATACCCCCCCGCCGCGATTACGTCATTCCCGAATTCTCTTCCTCTTTCACCGACCTTTGTGAGGTCGTTGAATACGACTTGGCTACTAA AGGGAAAGCAGCTTTCAACGACCCCGCCGAGCAAGCAGCTTTCAATTTCCTCTCACGCGCCTTCTTCGGTGTCAAGCCGATCGACACTCCGTTGGGGAAA GACGCGCCGTCCTTGATTTCCAAATGGGTCCTCTTCAACCTTGCTCCGATTCTCAGCGTCGGTTTGCCCAAAGAGGTTGAGGAAGCCACTCTCCACTCCG TCCGCCTCCCGCCGTTGCTCATCAAGAACGATTACCACCGTCTCTACGAATTCTTCACCTCCGCCGCCGGATCTGTGCTTGACGAGGCCGAACAGTCCGG GATCTCGCGGGACGAAGCTTGCCATAACATCCTCTTCGCCGTGTGTTTCAACTCATGGGGAGGGTTCAAGATCCTGTTCCCAAGCCTGATGAAGTGGATC GGGCGGGCAGGATTGGAGCTCCACACCAAGCTGGCACAAGAAATCAGATCCGCAATCCAATCGACGGGCGGAGGGAAAGTTACGATGGCGGCGATGGAAC AGATGCCGCTGATGAAGTCTGTGGTGTACGAAACGCTGCGTATCGAGCCGCCGGTTGCGCTGCAGTACGGGAAGGCGAAGAAGGATTTCATACTGGAAAG CCACGAGGCGGCGTACCAGGTGAAAGAAGGGGAGATGCTGTTCGGATACCAACCGTTCGCGACAAAAGACCCGAAGATATTTGACCGACCCGAGGAGTTC GTGGCGGACCGGTTCGTCGGGGAAGGGGTGAAGCTGATGGAGTACGTGATGTGGTCGAACGGGCCGGAGACGGAGACGCCGAGCGTGGCGAACAAGCAGT GCGCAGGGAAGGATTTCGTGGTGATGGCGGCAAGGCTGTTTGTGGTGGAGCTGTTTAAGAGGTACGACTCGTTTGATATTGAGGTGGGAACGTCGTCGCT GGGTGCTTCAATAACCTTGACTTCGCTTAAGAGGTCAACGTTTTGA
AA sequence Show only first row Show all	>Lus10032739 pacid=23158984 polypeptide=Lus10032739 locus=Lus10032739.g ID=Lus10032739.BGIv1.0 annot-version=v1.0 MKPLSLSARFLETTVSLELDLSKIVSITSTTKAAKNSSSQGSRNTSQPSTEPTCLLAHSSLPILVSSSSSTPRAFLYSSTCPKSRRRISSLELTCPLLSS PAVTVSSPALPGGYRILSYLDPSEPNHTKLKQLLFNLIPPRRDYVIPEFSSSFTDLCEVVEYDLATKGKAAFNDPAEQAAFNFLSRAFFGVKPIDTPLGK DAPSLISKWVLFNLAPILSVGLPKEVEEATLHSVRLPPLLIKNDYHRLYEFFTSAAGSVLDEAEQSGISRDEACHNILFAVCFNSWGGFKILFPSLMKWI GRAGLELHTKLAQEIRSAIQSTGGGKVTMAAMEQMPLMKSVVYETLRIEPPVALQYGKAKKDFILESHEAAYQVKEGEMLFGYQPFATKDPKIFDRPEEF VADRFVGEGVKLMEYVMWSNGPETETPSVANKQCAGKDFVVMAARLFVVELFKRYDSFDIEVGTSSLGASITLTSLKRSTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Lus10032739 [exp]	0	1
AT5G19730			Pectin lyase-like superfamily ...		Lus10028364 [exp]	3.9	0.9455
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10028273 [exp]	5.3	0.9427
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029319 [exp]	7.3	0.9421
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10012312 [exp]	10.0	0.9439
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	11.0	0.9443
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	11.8	0.9436
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	12.0	0.9439
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016223 [exp]	13.0	0.9350
AT2G36430			Plant protein of unknown funct...		Lus10020561 [exp]	15.7	0.9425
AT3G44710			Plant protein of unknown funct...		Lus10020562 [exp]	18.2	0.9428

Compare expression of checked genes

Lus10032739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.