Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23450 538 / 0 Protein kinase superfamily protein (.1.2) AT5G66790 446 / 2e-148 Protein kinase superfamily protein (.1) AT1G25390 289 / 5e-88 Protein kinase superfamily protein (.1) AT1G18390 280 / 1e-84 Protein kinase superfamily protein (.1.2) AT5G38210 276 / 2e-82 Protein kinase family protein (.1) AT1G66880 283 / 9e-82 Protein kinase superfamily protein (.1) AT5G02070 272 / 3e-81 Protein kinase family protein (.1) AT3G53840 268 / 4e-80 Protein kinase superfamily protein (.1) AT1G21250 253 / 7e-74 PRO25, WAK1 cell wall-associated kinase (.1) AT3G25490 245 / 1e-73 Protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011652 [exp] 511 / 1e-178 AT2G23450 337 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10000741 [exp] 526 / 4e-178 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 424 / 3e-139 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022432 [exp] 293 / 5e-89 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016737 [exp] 290 / 9e-88 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10029132 [exp] 279 / 3e-84 AT1G18390 537 / 0.0 Protein kinase superfamily protein (.1.2) Lus10014387 [exp] 279 / 3e-84 AT5G02070 493 / 8e-168 Protein kinase family protein (.1) Lus10008105 [exp] 245 / 4e-71 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10036691 [exp] 243 / 1e-70 AT1G69910 665 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G130600 [exp] 694 / 0 AT2G23450 605 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G038600 [exp] 673 / 0 AT2G23450 620 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G130900 [exp] 589 / 0 AT2G23450 773 / 0.0 Protein kinase superfamily protein (.1.2) Potri.007G034500 [exp] 579 / 0 AT2G23450 731 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G097100 [exp] 295 / 3e-90 AT5G38210 525 / 4e-179 Protein kinase family protein (.1) Potri.010G120800 [exp] 298 / 4e-90 AT1G18390 525 / 2e-178 Protein kinase superfamily protein (.1.2) Potri.017G118100 [exp] 296 / 8e-90 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.015G044750 [exp] 295 / 9e-90 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G054725 [exp] 291 / 2e-88 AT1G18390 516 / 2e-176 Protein kinase superfamily protein (.1.2) Potri.015G045101 [exp] 290 / 3e-88 AT1G18390 659 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10032741 pacid=23158992 polypeptide=Lus10032741 locus=Lus10032741.g ID=Lus10032741.BGIv1.0 annot-version=v1.0 ATGTTGTTCATAAGCTACTCATCATTTCTATTCTTATCAATAATTGCATTTTTCAATTCTTTCACTTCGGCCTCTGCCGCTGCCGCCGCCCTCTCTCATC CACGATCAGCCGCCGCCTGCAATCGCACGTGCGGTGGGAAAGACGTGAGTTACCCGTTCGGGTTCTCCCCCGGTTGCTACGTCAACCTAACCTGCTCCCC TGATGGCTATATGTCGATCGGAGAATTCAGGGTATCTGCCGTGGGCAACTCAACCATCCAAATGAACATCCAGCCTTCTTGCGACCGTCCGATCTCCGTT CTCGAATCCCTCTTCGCTCAAAACTACGCACCCAAGTCCACCAACGCAATCCTCCTCCACAACTGCACCAAACTGGCCACCTGCAACATCCCGACCATCG ACGTCCAGACTCATTTCGAGCCGGTTAACTGCTCCTCCAGAGTCGGAACCGCCGCCGACAACGGAAGCCTCAGCTGCTTCTCCGACATGATGACGTGGAA CGGGCTGTTTGATTATGCCAACATGACGCGTCTTACCCACTGCGATTACCTCATGTCGTCAATCTCGGTGCTGTACTCTTTCCCCGGCGACCGTAATTCC GGCGTCTCGCTCGCGGTGCAGATGATGGAGCTTGAGTGGTGGATGGACGGTGGGGATTGCTGGTCGTGCTCTGCAGATGCGGATTGCCATGTTATTAATA CTGTTGGGAGGCGGCGTGGAGGGCATCGGTGTAGCTGCAGGAAAGGGTTCATCGGCGACGGTTACCGGGATGGCGTCGGGTGTCTCAAAGATACATGCGG GTCTTCCGAATACTTTCTACACTATTGCAGACCTATTGGGATCGCCATTCTAACTGGAGGATTGGGCCTGGGAACAGCTATAGTCCTCCTCCTCAGCCTA GCCTGCTGCTTCATCCGAAGGAGATCACAATTCTCAAACGCCGAAAGCTCAACAAAGCGCCGCCTAGAGGAAGCGAAGGGAATCGACATCACTATCTACC CTTACAAAGAAATCGCCAGAGCCACTAACGGCTTCTCCGACACACAGAGACTCGGCACAGGGGCATACGGTACCGTCTATTCGGGGAAGCTCCATACCAA TTCCTTGGTTGCCATCAAACGCATCAAAAACAGAGACACCGAAAGCATCGACCAAGTCATTAACGAGATCAAGCTCATTTCCTCAGTCCGCCACCCCAAT CTAGTCCGCCTATTGGGTTGCTCCATCGAACGAGGCGAGCAAATCCTAGTCTACGAGTTCATGCCCAATGGCACCCTCAGCCAGCATTTACACGGCGAGC GAGGCCTCGGGCTGACATGGCCCATCCGCCTCGCCATTGTTCTCGAGACTGCTCATGCTGTAGCTCATCTCCACTCGGCAATCGACCCTCCGATCTTCCA CAGGGACATCAAGTCCAGCAATATATTGCTGGACTTCAACTACAAGTCTAAACTAGCTGATTTCGGACTTTCACGGTTGGGGATGCCCGAAATCTCACAC ATTTCTACCGCTCCACAAGGAACTCCTGGATACCTTGATCCGCAGTATCATCAGAATTATCACCTTTCGGACAAGAGCGATGTCTACAGTTTTGGAGTTG TTCTTGTGGAGATCATAACTGGGAGGAAAGCTGTGGATTTCTCGAGGATGCCCAGTGAGGTCAATTTGGCGAACATGGCCGCGGATCGGATCGGGAAGGG GAGATTGGACGAGATTGTGGATCCTAATTTGGAAGGGATCAATTCGGACGGTTGGACGATTGTGTCGATCCACAGAGTGGCGGAGATCGCCTTCAGGTGT TTGGCGTTCGAGAGAGAGTTGAGACCGAGCATGATGGAGGTTGCGGCGGAGCTAGAAGGAATTAAGACGGGGCAATGGGGGGAGACATGTAATTTGGTGA CCAGCGGAGAAGGTGGGCGACCGTCGTCGTCGTCGGAGGTTTCACAATGTCGGTCGTCTTCTTCGACGAATAATAGCGAGATGCCGTTGAGTTTGAATAT TGAGAGAGCTGAACTTCAGAATCAAACCAATGGTGTGAAGTCGGCGGAGAGATCGCTCAAGAATTATTCGCCGGCGTCAGTACGGGATCCTTGGTTGAGT GAACAGAGCTCACCTGGGTCCAACAGTTTTCAGAATAACGGTGGGGGAACTCGGTGA
AA sequence Show only first row Show all	>Lus10032741 pacid=23158992 polypeptide=Lus10032741 locus=Lus10032741.g ID=Lus10032741.BGIv1.0 annot-version=v1.0 MLFISYSSFLFLSIIAFFNSFTSASAAAAALSHPRSAAACNRTCGGKDVSYPFGFSPGCYVNLTCSPDGYMSIGEFRVSAVGNSTIQMNIQPSCDRPISV LESLFAQNYAPKSTNAILLHNCTKLATCNIPTIDVQTHFEPVNCSSRVGTAADNGSLSCFSDMMTWNGLFDYANMTRLTHCDYLMSSISVLYSFPGDRNS GVSLAVQMMELEWWMDGGDCWSCSADADCHVINTVGRRRGGHRCSCRKGFIGDGYRDGVGCLKDTCGSSEYFLHYCRPIGIAILTGGLGLGTAIVLLLSL ACCFIRRRSQFSNAESSTKRRLEEAKGIDITIYPYKEIARATNGFSDTQRLGTGAYGTVYSGKLHTNSLVAIKRIKNRDTESIDQVINEIKLISSVRHPN LVRLLGCSIERGEQILVYEFMPNGTLSQHLHGERGLGLTWPIRLAIVLETAHAVAHLHSAIDPPIFHRDIKSSNILLDFNYKSKLADFGLSRLGMPEISH ISTAPQGTPGYLDPQYHQNYHLSDKSDVYSFGVVLVEIITGRKAVDFSRMPSEVNLANMAADRIGKGRLDEIVDPNLEGINSDGWTIVSIHRVAEIAFRC LAFERELRPSMMEVAAELEGIKTGQWGETCNLVTSGEGGRPSSSSEVSQCRSSSSTNNSEMPLSLNIERAELQNQTNGVKSAERSLKNYSPASVRDPWLS EQSSPGSNSFQNNGGGTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23450			Protein kinase superfamily pro...		Lus10032741 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022190 [exp]	1.4	0.9718
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10036372 [exp]	3.5	0.9741
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014187 [exp]	3.7	0.9662
AT1G58030		CAT2	cationic amino acid transporte...		Lus10013638 [exp]	4.4	0.9637
AT2G39855			unknown protein		Lus10004678 [exp]	5.3	0.9707
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10028933 [exp]	6.0	0.9709
AT1G56140			Leucine-rich repeat transmembr...		Lus10031401 [exp]	6.9	0.9691
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10006461 [exp]	7.7	0.9670
AT1G13195			RING/U-box superfamily protein...		Lus10006253 [exp]	7.7	0.9685
AT1G44770			unknown protein		Lus10014131 [exp]	10.5	0.9672

Compare expression of checked genes

Lus10032741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.