Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 441 / 3e-150 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 427 / 7e-145 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 389 / 4e-130 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT2G25160 369 / 3e-122 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT3G25180 367 / 2e-121 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT5G07990 298 / 8e-95 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37320 295 / 1e-93 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT4G37330 282 / 4e-89 CYP81D4 "cytochrome P450, family 81, subfamily D, polypeptide 4", cytochrome P450, family 81, subfamily D, polypeptide 4 (.1) AT4G37310 277 / 1e-86 CYP81H1 "cytochrome P450, family 81, subfamily H, polypeptide 1", cytochrome P450, family 81, subfamily H, polypeptide 1 (.1) AT2G23190 277 / 2e-86 CYP81D7 "cytochrome P450, family 81, subfamily D, polypeptide 7", cytochrome P450, family 81, subfamily D, polypeptide 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011657 [exp] 938 / 0 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10035635 [exp] 736 / 0 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10010758 [exp] 582 / 0 AT4G31970 346 / 1e-114 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10028217 [exp] 447 / 1e-155 AT4G31970 292 / 2e-95 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10007837 [exp] 444 / 1e-151 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032745 [exp] 443 / 5e-151 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011658 [exp] 411 / 1e-138 AT4G31940 510 / 9e-178 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038200 [exp] 404 / 1e-135 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 401 / 8e-135 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G038100 [exp] 592 / 0 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038000 [exp] 589 / 0 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038200 [exp] 577 / 0 AT4G31940 501 / 7e-174 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 568 / 0 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037600 [exp] 564 / 0 AT4G31940 478 / 7e-165 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037800 [exp] 562 / 0 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037400 [exp] 560 / 0 AT4G31940 476 / 4e-164 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037500 [exp] 489 / 5e-169 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.009G108600 [exp] 462 / 5e-159 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 457 / 2e-156 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10032743 pacid=23159050 polypeptide=Lus10032743 locus=Lus10032743.g ID=Lus10032743.BGIv1.0 annot-version=v1.0 ATGGCCGCAACTTCACTAATAGTAGCCTCCCTTGCCTTCATCTATTTCCTATTCCGAGTAGCAACCACAGCCGTCGGCAAAAAGAATGAAAACGTACCGC CGCGGGCCGGCGGAGCATGGCCGATGGTCGGGCACCTTCATAACCTAGGTGGGCCGCAGCCGACACACAAAGTATTGGGCGACATGGCCGACAAATACGG CTCAATATTCACAATCCAAATGGGAATCCACCACACCCTAGTCGTCAGCAATTGGGAGACAGCTAAGGAGTGTTTGACAATCCACGACCGGGTGTTCGCC GACCGACCCGCAACCCTAGCCATGGATCTTCTCGGGTATCAAAGATCCATGGTGGGGTTTAGTTCCTATGGGTCCTACTGGCGACAAGTCCGGAAGATTA CTACGCTAGAGCTTCTTTCTTCTCACCGCCTCGAGTTGCTGAAAAACGTGAGGGAGTTGGAGGTCAAACTCGCGACAAAGGAGCTCTACGGGTACTGGGC AAAAGAAGTACAAAATGGTGTCGTTTCAATGGAGATTACTAGCTGGTTTGGTGAGATAACGTTGAACGTTATTCTGAAGATGATCGTGGGGAAGTCCATA GGCTACTTCAAGGGAGGAGAAGACGGCGTTAAATTGCTTGGATTGTTCAAAGATTTTTGTGAGCTTTCTGGGAGGTTTTTGGTGGCTGATGGTCTGCCAT ATTTGAGGTGGTTGGATGTCGGAGGATTTGAGAAAGCCATGAGGAAAACGGCGGAGGAAATGGACGTCGTGGTGAGTGGGTGGCTAAAGGAGCACAAAGC TAAGAAAAATTCTGCCGGCAGAGTTATGGCTGAAGATGACTTCATGGATGTGATTCTTAATGTTCTTGACGATGAAGGTAGTATCGAGGGTCGAGATTCC GATACTACTAACAAAGCTACTTGCCTGGCCCTTACAGTAGCTGCATCAGACACAACAAGTGTAACAATGACATGGCTCCTCTCATTACTCGTCAACCATC CCGAGGTCTTGAGGAAAGCGCAAATGGAACTAGATGATAATGTTGGCAAAGAGAGACAAGTCCAAGAGTGCGACCTTCAAAATTTGGTTTATCTGAAAGC AATCGTCAAAGAAACCCTCCGTTTATATCCTCCGGCGCCACTTTCTATACCCCACCAATCTACGGAGGATTGTATCGTCGCAGGCTATCTAGTCCGTGGA GGCACCAGTCTCATTGTTAATATATCAAAGATTCAACGTGACCCACAAATTTGGCCAAACCCAGATGAGTTTCAACCTGACCGGTTTCTTACTACTCATA AAGAAGTTGACGTCAAAGGTCATAACTTTGAACTCATACCATTTGGTAGTGGACGGAGGATGTGCCCTGGCTTGAACTTTGCGCTTCAAGTTATGTACTT GACCGTGGCTACACTTTTGCATGGTTTTGATTTCTCCAGAGTATCTACGGAACTAATCGATATGACGGAAAGTGTTGGGCTGACCAATCCAAAAGCTTAT CCTCTTGAAGTCGTCGTTAAGGAGCGTTTTGTGGCGACAAAGGAAGGGTATCTCCGTCATGGCGTTGGAGAGATTGGCGGTTCCTCTTCCGGTTCTACCA TAAGGTGGATCTTCGATGGGTAG
AA sequence Show only first row Show all	>Lus10032743 pacid=23159050 polypeptide=Lus10032743 locus=Lus10032743.g ID=Lus10032743.BGIv1.0 annot-version=v1.0 MAATSLIVASLAFIYFLFRVATTAVGKKNENVPPRAGGAWPMVGHLHNLGGPQPTHKVLGDMADKYGSIFTIQMGIHHTLVVSNWETAKECLTIHDRVFA DRPATLAMDLLGYQRSMVGFSSYGSYWRQVRKITTLELLSSHRLELLKNVRELEVKLATKELYGYWAKEVQNGVVSMEITSWFGEITLNVILKMIVGKSI GYFKGGEDGVKLLGLFKDFCELSGRFLVADGLPYLRWLDVGGFEKAMRKTAEEMDVVVSGWLKEHKAKKNSAGRVMAEDDFMDVILNVLDDEGSIEGRDS DTTNKATCLALTVAASDTTSVTMTWLLSLLVNHPEVLRKAQMELDDNVGKERQVQECDLQNLVYLKAIVKETLRLYPPAPLSIPHQSTEDCIVAGYLVRG GTSLIVNISKIQRDPQIWPNPDEFQPDRFLTTHKEVDVKGHNFELIPFGSGRRMCPGLNFALQVMYLTVATLLHGFDFSRVSTELIDMTESVGLTNPKAY PLEVVVKERFVATKEGYLRHGVGEIGGSSSGSTIRWIFDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032743 [exp]	0	1
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10010580 [exp]	10.7	0.9338
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10025681 [exp]	12.0	0.9133
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10030760 [exp]	13.9	0.9181
AT5G48130			Phototropic-responsive NPH3 fa...		Lus10001738 [exp]	14.6	0.8691
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10037816 [exp]	14.8	0.9245
AT5G49710			unknown protein		Lus10015965 [exp]	19.6	0.9220
AT2G36970			UDP-Glycosyltransferase superf...		Lus10021437 [exp]	20.8	0.8688
AT5G65500			U-box domain-containing protei...		Lus10025715 [exp]	23.9	0.9126
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10017094 [exp]	25.2	0.9204
AT3G46540			ENTH/VHS family protein (.1)		Lus10040297 [exp]	26.0	0.9206

Compare expression of checked genes

Lus10032743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.