Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037828 [exp] 65 / 1e-14 ND / Lus10009076 [exp] 48 / 7e-08 ND / Lus10021739 [exp] 42 / 2e-05 ND / Lus10002313 [exp] 40 / 0.0002 ND / Lus10005283 [exp] 39 / 0.0003 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032744 pacid=23159030 polypeptide=Lus10032744 locus=Lus10032744.g ID=Lus10032744.BGIv1.0 annot-version=v1.0 ATGCCGCCGAAGAATCAACAACAGCTCGGTCCCTGCAAGGTTGTTGCCGACGGGACACGCCGGAACCAGATGCTGACTGGGAGCATGACCGCGCAACAAG CTGACCCGGACCTCGTTACAGTACAGGTCCAAGGTCTTTCAGTGTGGGAAAGCAATGACGACGACGAGCTGTCACTAAAGAAGATTGCTCCACCACCACC GTCACACAATTTTCTTCTCTGCTTGGTGGGTCGTTTCTTGGGAGAGAAACAGATCAATTTTCAAGGTACGAAACGAATTCTCGAACTTGCATGGAAATCG GGACGGAAGATGATGATCCCTAGCCTGGGCGAAGGCCGATATCTGACTTATTTCGAACACGAAATCGATCTCCAACGCATCATCACCGATGGACTATGA
AA sequence Show only first row Show all	>Lus10032744 pacid=23159030 polypeptide=Lus10032744 locus=Lus10032744.g ID=Lus10032744.BGIv1.0 annot-version=v1.0 MPPKNQQQLGPCKVVADGTRRNQMLTGSMTAQQADPDLVTVQVQGLSVWESNDDDELSLKKIAPPPPSHNFLLCLVGRFLGEKQINFQGTKRILELAWKS GRKMMIPSLGEGRYLTYFEHEIDLQRIITDGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032744 [exp]	0	1
AT5G03310			SAUR-like auxin-responsive pro...		Lus10037990 [exp]	2.0	0.8313
AT5G46490			Disease resistance protein (TI...		Lus10042465 [exp]	8.9	0.7896
AT5G05340			Peroxidase superfamily protein...		Lus10000625 [exp]	14.4	0.7932
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040733 [exp]	19.2	0.8175
AT4G26010			Peroxidase superfamily protein...		Lus10005679 [exp]	31.3	0.7782
AT1G63740			Disease resistance protein (TI...		Lus10010546 [exp]	35.4	0.7183
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10024049 [exp]	75.7	0.7437
AT3G07870			F-box and associated interacti...		Lus10012357 [exp]	77.8	0.7222
					Lus10017936 [exp]	86.4	0.7010
AT1G08090		LIN1, ACH1, NRT...	LATERAL ROOT INITIATION 1, nit...		Lus10016120 [exp]	97.6	0.7014

Compare expression of checked genes

Lus10032744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.