Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 513 / 6e-179 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 511 / 5e-178 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 454 / 6e-156 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT3G25180 369 / 1e-122 CYP82G1 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) AT2G25160 360 / 4e-119 CYP82F1 "cytochrome P450, family 82, subfamily F, polypeptide 1", cytochrome P450, family 82, subfamily F, polypeptide 1 (.1) AT5G07990 295 / 5e-94 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37340 285 / 4e-90 CYP81D3 "cytochrome P450, family 81, subfamily D, polypeptide 3", cytochrome P450, family 81, subfamily D, polypeptide 3 (.1) AT4G37370 285 / 5e-90 CYP81D8 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) AT4G37360 283 / 1e-89 CYP81D2 "cytochrome P450, family 81, subfamily D, polypeptide 2", cytochrome P450, family 81, subfamily D, polypeptide 2 (.1) AT4G37310 282 / 5e-89 CYP81H1 "cytochrome P450, family 81, subfamily H, polypeptide 1", cytochrome P450, family 81, subfamily H, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007837 [exp] 893 / 0 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10035635 [exp] 426 / 1e-144 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011658 [exp] 421 / 9e-143 AT4G31940 510 / 9e-178 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011657 [exp] 432 / 4e-142 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032743 [exp] 413 / 2e-139 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038203 [exp] 403 / 1e-135 AT3G25180 495 / 9e-172 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Lus10038200 [exp] 392 / 3e-131 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025902 [exp] 390 / 1e-130 AT4G31940 449 / 1e-153 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10025923 [exp] 385 / 1e-128 AT4G31970 420 / 4e-142 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G037500 [exp] 564 / 0 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037300 [exp] 487 / 6e-169 AT4G31940 629 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.009G108600 [exp] 472 / 3e-163 AT4G31940 555 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.016G008500 [exp] 467 / 1e-160 AT4G31940 499 / 2e-173 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037900 [exp] 456 / 1e-156 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.001G334700 [exp] 445 / 3e-152 AT4G31970 459 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G038000 [exp] 443 / 3e-151 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038100 [exp] 441 / 1e-150 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038200 [exp] 439 / 1e-149 AT4G31940 501 / 7e-174 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.013G125300 [exp] 433 / 1e-147 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10032745 pacid=23158988 polypeptide=Lus10032745 locus=Lus10032745.g ID=Lus10032745.BGIv1.0 annot-version=v1.0 ATGATGGAAACAACGTTCCTGAGACTAATTCCTCTCCCTCTATTTCTCTTGGTACCATGTCTTTGTTTCTACATTCTCAAAAACAAAAAGCCAAACTCTA CTTCACTTCCTCCGGAAGCGGGTGGCGCGTGGCCGATCATTGGCCACCTTCACAAACTAGGCGGCTCCGGCAAGCTCCTTCACAAGACCCTGGGATCCAT GGCCGACCAATATGGACCGGCTTTCACCATCAGGTTAGGGCGGCTGAGTTGCTACGTGGTCAGCTCAGCTGACGTGGCCAAGGAGTGCTTCACCACCAGT GACAAGGCTCTTGGCTCGCGCCCTTGTTCAACAGCCACCAAAATCATGTGCTATAACGACTCCGTTTTTGGGTTCGCCCCCACGACTCCTCATTGGCGAG AGATGAGGAAGATGGTGGTGCTTGAACTTCTCTCCAACCGACGCCTGGAATTGTTGACTAAAGTTGTCGCTTCGGAGCTTGACATCGCAATCCAAAACCT TTATAGTTTGTGCGGCCTCGGATCGGCACTTGTGAAGGTAGACCAGTGGTTTGAGGATTTCACCTATAATGTTGTCGCCAGGGTAGTGGCCGGAAAACGC AACGGCGGAGGACAACAAGAGGCAAAGAGGTGCAAAAAGGCAGTAGGAGAGTTTTTCCGCCTGATGGGTATGTTTGTGGTTGGAGATGCAATACCATGGT TAGGGTGGATGGATTTTCAAGGTCATGGGAAGGAGATGAAGGAGACAGCTCAGGAAATGGATAGTGTGTTTGGTGGGTGGGTGAATGAGCACCGCAATAG CAAAGTTTCTGGTCAAGTGAAGGCAGAGGATGAACAAGATTTCATTGACTTAATGTTGTCTTTTGAAGAGCAAGGCCGTTTTTCTGGATTTCCTTGCGAT TCTGATACCAACATCAGGGCTACCTGCGTGTCTTTGATCACGGGTGGCACAGACACTTCTTCCCTAACAATGACATGGGTGATCTCGTTGCTGCTCAACC ATCCCTCAGTCTTAAACAAGGCACAACAAGAGCTGGACGTTCAAGTTGGACTCCATCGGCGAGTGAACGAATCCGACATCGACAACCTCATCTACATCCA AGCTATAATCAAAGAAACCCTGCGACTTTACCCAGTGGCTCCACTCTCGGGTCCAAGGGAAGCATTAGAAGACTGCACAGTAGCTGGCTACCATGTCCCC AAAGGCACCCGACTGATCATCAATGCATGGAAAATCCATAGAGATCCCAAACTTTGGCCAAACCCGTTGGAATTCCAGCCGGAGAGATTCTTGACAACAA CCCACGGGCACATAGATGTGAAAGGCCATAACTTCGAGCTTCTCCCTTTCGGCTCAGGGAGAAGAGTGTGCCCTGGAGCTTCATTATCGATGCAAACACT TAACCTCACCATTGCTAGGCTTCTTCAGGCCTTTGATTTGCAAACGCCCGGTGGTCAGCCGATTGACATGAATGAGAAGGCTGGAGTCAACTTGCCTAAA GCAACTCCGTTGGAAGTTGTCCTTTCCCCAAGGATTGATGTCAACATGTTGTACCCGTAA
AA sequence Show only first row Show all	>Lus10032745 pacid=23158988 polypeptide=Lus10032745 locus=Lus10032745.g ID=Lus10032745.BGIv1.0 annot-version=v1.0 MMETTFLRLIPLPLFLLVPCLCFYILKNKKPNSTSLPPEAGGAWPIIGHLHKLGGSGKLLHKTLGSMADQYGPAFTIRLGRLSCYVVSSADVAKECFTTS DKALGSRPCSTATKIMCYNDSVFGFAPTTPHWREMRKMVVLELLSNRRLELLTKVVASELDIAIQNLYSLCGLGSALVKVDQWFEDFTYNVVARVVAGKR NGGGQQEAKRCKKAVGEFFRLMGMFVVGDAIPWLGWMDFQGHGKEMKETAQEMDSVFGGWVNEHRNSKVSGQVKAEDEQDFIDLMLSFEEQGRFSGFPCD SDTNIRATCVSLITGGTDTSSLTMTWVISLLLNHPSVLNKAQQELDVQVGLHRRVNESDIDNLIYIQAIIKETLRLYPVAPLSGPREALEDCTVAGYHVP KGTRLIINAWKIHRDPKLWPNPLEFQPERFLTTTHGHIDVKGHNFELLPFGSGRRVCPGASLSMQTLNLTIARLLQAFDLQTPGGQPIDMNEKAGVNLPK ATPLEVVLSPRIDVNMLYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032745 [exp]	0	1
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	1.4	0.9830
AT3G46540			ENTH/VHS family protein (.1)		Lus10040297 [exp]	1.7	0.9817
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	2.4	0.9828
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	3.5	0.9756
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036537 [exp]	3.5	0.9718
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	3.9	0.9744
AT1G61590			Protein kinase superfamily pro...		Lus10034757 [exp]	5.3	0.9718
AT3G50920			Phosphatidic acid phosphatase ...		Lus10028327 [exp]	5.3	0.9670
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10033867 [exp]	5.5	0.9707
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10031349 [exp]	5.5	0.9564

Compare expression of checked genes

Lus10032745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.