Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25900 573 / 0 ATKO1, CYP701A3, GA3 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) AT2G40890 174 / 3e-48 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT4G37430 169 / 1e-46 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1) AT3G10560 165 / 8e-45 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1) AT5G57220 163 / 2e-44 CYP81F2 "cytochrome P450, family 81, subfamily F, polypeptide 2", cytochrome P450, family 81, subfamily F, polypeptide 2 (.1) AT2G45560 162 / 6e-44 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT4G37400 157 / 5e-42 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT4G37410 154 / 5e-41 CYP81F4 "cytochrome P450, family 81, subfamily F, polypeptide 4", cytochrome P450, family 81, subfamily F, polypeptide 4 (.1) AT1G74550 153 / 7e-41 CYP98A9 cytochrome P450, family 98, subfamily A, polypeptide 9 (.1) AT1G66540 149 / 9e-41 Cytochrome P450 superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011667 [exp] 768 / 0 AT5G25900 624 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10032750 [exp] 766 / 0 AT5G25900 619 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10042641 [exp] 743 / 0 AT5G25900 595 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10042640 [exp] 741 / 0 AT5G25900 582 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10022898 [exp] 708 / 0 AT5G25900 567 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10033524 [exp] 177 / 5e-49 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10020847 [exp] 175 / 1e-48 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10020437 [exp] 169 / 2e-46 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10042815 [exp] 167 / 3e-45 AT1G13110 396 / 3e-133 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129700 [exp] 642 / 0 AT5G25900 665 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Potri.006G033300 [exp] 187 / 5e-53 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031100 [exp] 182 / 3e-51 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031000 [exp] 174 / 3e-48 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.013G125300 [exp] 166 / 3e-45 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.001G274600 [exp] 164 / 2e-44 AT5G07990 488 / 2e-169 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.008G025500 [exp] 163 / 3e-44 AT5G04660 761 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Potri.016G137600 [exp] 162 / 1e-43 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.002G150100 [exp] 161 / 1e-43 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.003G007000 [exp] 160 / 3e-43 AT4G37370 525 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10032747 pacid=23158981 polypeptide=Lus10032747 locus=Lus10032747.g ID=Lus10032747.BGIv1.0 annot-version=v1.0 ATGGATCTTGCTTCCATCACCGTCGCTCTTCCCAACCTTCAAATAGTTGCTGCTGTAGTGGTTGTCATGGTTGGGTTCTTCGTACCCCTATATTTCATAA AATTGTTGACCGCTAATAAAAAGAAGCAAAAATCCAGGCTCCTCCTAGTTCCAGAGGTTCCAGGGATGCCGATAATAGGAAATTTATTACAGTTGAAGGA GAAAAAACCCCATAAAACTTTTACTAAATGGGCTGAGATTTATGGTCCGATATACTCCATCAAAACGGGTTCCACCTCTGTCGTCGTCCTAAACTCCACT AACGTCGCAAAAGAGGCTATGGTGACCAAATTCTCCTCAATAAGTACAAGGAAGTTACCAAAGGCTTTGACTTTACTTACTCGGAGTAAATCTACTGTTG CTATGAGTGATTATGATGACTTCCACAAAATGGCAAAACGTCACCTTCTCACTACCCTTTTGAGCTCAACTGTTCAGAAAAAACATTACTCCAACAGACT TATAATGGTGGACAATATAACAAGCCAATTACATGCTCATGCCAAAGCTAATCCTGGGAAAGCTTTCAATTTCCAGAAGATGTTCGAATCTGAACTCTTC GGTTTATCTATGAGAGAAATAATCGGGAAAGAAGTGGAATCTATCTATGTTAAGGAATTGGGAACTAGAGTGTCAAGGGAACAAATATTTAAGATTTTAG TATTGGATCCATTGGATGGCTGCATCGAAGTAGACTGGAGAGATTTCTTCCCGTACTTGAGGTGGGTCCCCAATCTTGGCTTTGAAAAAAAGTTGGAGCA AATGCATTTTCGGAGGGATGCAGTGATCAGCGCCATTGTCGAGGAACAAAAACAACGGATTGCTTCTGGTGAGGTCATCGACTGTTACATCCACCACTTG TTGTCTTCAGACATGAGCCTAACGGATCTCCAAATCAGGATGTTGATATGGGAGGTGATTGTTGAGGCATCTGATTCAACATTGGTGGTTACAGAATGGG CTATGTATGAACTAGCAAGAAATGTTGAGTGTCAAGAGAGACTATTTCGCTATATTGAGGGTGAATGTGGGTCTGAGGAATTGGCAGAACAACACTTATC GAAACTTCCATATCTTATGGCCATTTTCCATGAGACCCTTAGGAGGCACACCCCTGTTCCTATCATCCCTTTGCGCCATGTGGAAGAAGACATTGAATTA GGAGGGTATAATGTCCCTGCTGGAACCGAGATAGCTATAAACCTGTACGGATGCAACATGGATGAAAAGCAATGGGATAATCCAGAACAGTGGTTACCAG AGAGGTTCCTTAACGAGGGATCTGATCCAATGGAGCTACACAAAACAATGGCATTTGGAAGTGGGAAGAGGGCTTGTGCGGGAGCATTCCAAGCATTGTT GGTTGCTTGCACCTCGATAGGGAGAATGGTGCAACAATTTGAGTGGACTCTTAGGGAAGAGGAGCAAGATAGTGAGGATATTGAATCCCTAACAGCCAGA AAACTTGAACCGTTGCATGCAATCATCAAACCAAGATGGCAGAAGAAAATAACTAACGTTTAA
AA sequence Show only first row Show all	>Lus10032747 pacid=23158981 polypeptide=Lus10032747 locus=Lus10032747.g ID=Lus10032747.BGIv1.0 annot-version=v1.0 MDLASITVALPNLQIVAAVVVVMVGFFVPLYFIKLLTANKKKQKSRLLLVPEVPGMPIIGNLLQLKEKKPHKTFTKWAEIYGPIYSIKTGSTSVVVLNST NVAKEAMVTKFSSISTRKLPKALTLLTRSKSTVAMSDYDDFHKMAKRHLLTTLLSSTVQKKHYSNRLIMVDNITSQLHAHAKANPGKAFNFQKMFESELF GLSMREIIGKEVESIYVKELGTRVSREQIFKILVLDPLDGCIEVDWRDFFPYLRWVPNLGFEKKLEQMHFRRDAVISAIVEEQKQRIASGEVIDCYIHHL LSSDMSLTDLQIRMLIWEVIVEASDSTLVVTEWAMYELARNVECQERLFRYIEGECGSEELAEQHLSKLPYLMAIFHETLRRHTPVPIIPLRHVEEDIEL GGYNVPAGTEIAINLYGCNMDEKQWDNPEQWLPERFLNEGSDPMELHKTMAFGSGKRACAGAFQALLVACTSIGRMVQQFEWTLREEEQDSEDIESLTAR KLEPLHAIIKPRWQKKITNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032747 [exp]	0	1
					Lus10003161 [exp]	4.6	0.9205
AT1G03700			Uncharacterised protein family...		Lus10015443 [exp]	8.0	0.9117
AT1G03700			Uncharacterised protein family...		Lus10011179 [exp]	10.1	0.9088
AT5G59190			subtilase family protein (.1)		Lus10040251 [exp]	10.5	0.8184
AT1G54540			Late embryogenesis abundant (L...		Lus10031888 [exp]	13.0	0.8992
AT1G54540			Late embryogenesis abundant (L...		Lus10031317 [exp]	14.5	0.8796
AT3G47090			Leucine-rich repeat protein ki...		Lus10003071 [exp]	14.8	0.8563
					Lus10021373 [exp]	15.2	0.8969
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10012508 [exp]	17.1	0.7570
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10030307 [exp]	17.7	0.8776

Compare expression of checked genes

Lus10032747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.