Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42700 65 / 8e-12 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G66980 57 / 2e-08 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49480 50 / 1e-06 B3 REM19, RTV1 related to vernalization1 1 (.1) AT3G18990 47 / 2e-05 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT5G18000 47 / 2e-05 B3 VDD VERDANDI (.1) AT3G53310 46 / 3e-05 B3 REM20 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 46 / 5e-05 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 44 / 7e-05 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 45 / 9e-05 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G31640 44 / 0.0003 B3 REM5 transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032098 [exp] 82 / 3e-16 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10015266 [exp] 74 / 3e-13 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10017434 [exp] 69 / 2e-12 AT5G58280 205 / 7e-64 AP2/B3-like transcriptional factor family protein (.1) Lus10019873 [exp] 65 / 9e-11 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1) Lus10038189 [exp] 62 / 3e-10 AT3G18990 82 / 8e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10042406 [exp] 57 / 1e-08 AT4G31690 130 / 3e-34 Transcriptional factor B3 family protein (.1) Lus10019870 [exp] 54 / 2e-07 AT3G19184 253 / 8e-83 AP2/B3-like transcriptional factor family protein (.1) Lus10019871 [exp] 54 / 3e-07 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10016286 [exp] 52 / 4e-07 AT4G33280 166 / 7e-49 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036800 [exp] 499 / 4e-171 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 81 / 5e-16 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G141800 [exp] 67 / 1e-11 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 66 / 4e-11 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 59 / 4e-09 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 58 / 9e-09 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G147000 [exp] 57 / 2e-08 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.018G140700 [exp] 56 / 5e-08 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 56 / 7e-08 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 52 / 3e-07 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10032748 pacid=23159019 polypeptide=Lus10032748 locus=Lus10032748.g ID=Lus10032748.BGIv1.0 annot-version=v1.0 ATGGGCCCTTGTTACGCTGTTCTGGAGGAAAACGAGATGGAGAATAGCAGATGTCCTTGCTTCTTTGAGACATTTTCTGCTAATTTGTTCTCCGCGCGAC TGGTTGGTGGTCTATTCCTTGATCATGGTTGGCCTACCTTTGTAGCGGATCATTCCCTGGAATGCGGTGATCTTCTTGTTTTCAGATATGATGGGAAGTT TTGTTTCACCGTGCAAGTATTTGATGCAAGTAAGTGTGAGAAAGAAGCAGCCTTCCAGGCCGATTGTAGTCGATATCGGAATAGTCTTCATGAGAGCACA GGAAAGAAGAGGGCAAGAGAGGAGGATTATGCAGTGTCTGATAAAATTTCCAAACGTAGGAAGAATAACTGCAGTGGGGAGAACTCAGAATGCACGGAAA GAAATGAGAGCATGGAAGCTTTGGCGGGTATGTCAGATCTGGTAGATATACTGCCCAAGTGTGGATTGGTGATCTTAGGTAAAGCATCCCAGAAAAGGAA TTTAGCTGATCAAACGGAGCAATCTTGGAGTCGATCTAGCAATGCTGCATCGTCATCCAAATTCAAATCTCTCCACGAAAATCCAGGTTATGGGTCCGCT TTCTCTGAAAGGGAGAAAAGAGTTGCAGAATCTTTTATATCCTGCTATCCATACTTTGTGAGGATCATGAAAAGATTTAACATCAATGGCTCATACACCC TGAATATACCATATAAGTTCTCGATGGCGCATCTTCCTGCTTGTAAAACAGAAATTGTCCTTGGCACTGTGAAAGGGGCAACTTTTACTGTAAATTCAGT GCCGACAACTAAGGTACACACAAGTCATACTTTATGTGGAGGATGGATGGCCTTCGTCCGCAGTAATGACCTCAAGATTGGAGACGTTTGCATTTTTGAG CTTGTTAGGAAATATGAACTTCGTGTTTTCATTCTTCGCGCGGGGAAAGATGGCCCAGACAATCAAAGTGAAATATTAGCTTGCAATGGTGTAAAGGTTG GATGCTCAGCCACTTCACAGAGAATCCAAAGTCATCGGAAGAAATCTAGGAAACCCTCTTCAAAGGTTGGTACAAAACTAATCAAGCATGTGGAACTCTG TGAAGTAGGAGACTCAAACAAGAGCCAGCCAGCTGTCTTATTGGATGGCAGTACAAAACACAGCCCTGCAACAAAGATCTCCGATTCAAATTTTAAGACG CTTGGGAAGGGAGAGTATGTAGAAGGTGATTTGCATACAAAAACTGGGATGGGTGTAAAAATGATGTTGTCACTTGAAGAGAAGGCAGCCAAGTCCTTTA GATCCCGTTTTCCGCATTTTGTTAGAATTATGAGGAAGTTCAACGTCAGTGGTTCATATACTCTGAAAATCCCCCATCGGTTCTCAACAGAGTATCTTCC TGGATTCAAAACAGAGATTGTCCTGTGTAACCTGCGAGGGGGAAGGTGGCCTGTGAACTCACTTCCAGACTCGAAAGGACGGTCAGTTCACACATTTTGC GGCGGGTGGATGGCCTTCGTTCGTGATAATGGTGTGAAGCTGGGGAACACTTGCATATTCGAACTGGTGAGCAGCTCTGAAATGCGGGTGCACATACATA GTAACGATGGAGGAGAAGGTAGTGAAAATCAATCTGGGAATTCCGCAGGCAATAATGAGATGCCCCTTGTCCCATTTTCTTCTGACGATCATCATGCTAT CCTTGATGAACCATTTTCTTAG
AA sequence Show only first row Show all	>Lus10032748 pacid=23159019 polypeptide=Lus10032748 locus=Lus10032748.g ID=Lus10032748.BGIv1.0 annot-version=v1.0 MGPCYAVLEENEMENSRCPCFFETFSANLFSARLVGGLFLDHGWPTFVADHSLECGDLLVFRYDGKFCFTVQVFDASKCEKEAAFQADCSRYRNSLHEST GKKRAREEDYAVSDKISKRRKNNCSGENSECTERNESMEALAGMSDLVDILPKCGLVILGKASQKRNLADQTEQSWSRSSNAASSSKFKSLHENPGYGSA FSEREKRVAESFISCYPYFVRIMKRFNINGSYTLNIPYKFSMAHLPACKTEIVLGTVKGATFTVNSVPTTKVHTSHTLCGGWMAFVRSNDLKIGDVCIFE LVRKYELRVFILRAGKDGPDNQSEILACNGVKVGCSATSQRIQSHRKKSRKPSSKVGTKLIKHVELCEVGDSNKSQPAVLLDGSTKHSPATKISDSNFKT LGKGEYVEGDLHTKTGMGVKMMLSLEEKAAKSFRSRFPHFVRIMRKFNVSGSYTLKIPHRFSTEYLPGFKTEIVLCNLRGGRWPVNSLPDSKGRSVHTFC GGWMAFVRDNGVKLGNTCIFELVSSSEMRVHIHSNDGGEGSENQSGNSAGNNEMPLVPFSSDDHHAILDEPFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10032748 [exp]	0	1
AT3G52040			unknown protein		Lus10005332 [exp]	2.8	0.7716
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10041638 [exp]	8.6	0.7770
AT4G10925			Nuclear transport factor 2 (NT...		Lus10001815 [exp]	10.7	0.7422
AT4G29660		EMB2752	embryo defective 2752 (.1)		Lus10015598 [exp]	16.2	0.7333
AT5G47710			Calcium-dependent lipid-bindin...		Lus10039113 [exp]	17.3	0.7249
AT1G19240			unknown protein		Lus10034891 [exp]	18.8	0.7352
AT5G08010			unknown protein		Lus10040520 [exp]	20.7	0.7756
AT1G15220		ATCCMH	cytochrome c biogenesis protei...		Lus10038941 [exp]	21.1	0.6727
AT1G55170			unknown protein		Lus10034321 [exp]	23.2	0.7614
AT3G05870		APC11	anaphase-promoting complex/cyc...		Lus10031549 [exp]	23.5	0.7677

Compare expression of checked genes

Lus10032748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.