Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33280 59 / 1e-11 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT4G34400 53 / 3e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 39 / 0.0002 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G66980 39 / 0.0002 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G31610 39 / 0.0003 B3 REM1, ATREM1 REPRODUCTIVE MERISTEM 1, Transcriptional factor B3 family protein (.1) AT4G01580 38 / 0.0004 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016286 [exp] 81 / 2e-19 AT4G33280 166 / 7e-49 AP2/B3-like transcriptional factor family protein (.1) Lus10016285 [exp] 80 / 9e-19 AT4G33280 139 / 3e-37 AP2/B3-like transcriptional factor family protein (.1) Lus10023691 [exp] 76 / 2e-17 AT4G33280 192 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Lus10032873 [exp] 76 / 3e-17 AT4G33280 129 / 1e-33 AP2/B3-like transcriptional factor family protein (.1) Lus10032871 [exp] 62 / 2e-12 AT4G33280 152 / 1e-42 AP2/B3-like transcriptional factor family protein (.1) Lus10032872 [exp] 57 / 9e-11 AT4G33280 93 / 2e-28 AP2/B3-like transcriptional factor family protein (.1) Lus10027943 [exp] 48 / 2e-07 AT3G18960 76 / 9e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10017970 [exp] 42 / 2e-05 AT3G18990 90 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10041961 [exp] 42 / 2e-05 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129800 [exp] 71 / 8e-16 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 61 / 2e-12 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129900 [exp] 59 / 3e-11 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 53 / 3e-09 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 45 / 1e-06 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10032749 pacid=23158960 polypeptide=Lus10032749 locus=Lus10032749.g ID=Lus10032749.BGIv1.0 annot-version=v1.0 ATGAGACACAAATTGCCGGAAACCGTCACGGTAAGGGGTCCCAGCAAAATTGAGTGGAGAGCTGGATCGACGGCCGAAAATGACAGCGGCGTGTTCTTCT CTCTCAGCTGGAGGGAATTCGCAGCGAACAACTCATTGCAACCCAATGATCTGTTAGTCTTCAAGTACAGTGATGATTCCGGTTTCGATGTTGGGATTGT CGATCCCGCCATCTCCTGCGAGACGTTGCACTGGATTTCGCCAGGAAAATTGAGGCACCTAAACGGGGTCGTCAGACTCAGCCAGCTGCAGAGGAGGAAG AAGTGA
AA sequence Show only first row Show all	>Lus10032749 pacid=23158960 polypeptide=Lus10032749 locus=Lus10032749.g ID=Lus10032749.BGIv1.0 annot-version=v1.0 MRHKLPETVTVRGPSKIEWRAGSTAENDSGVFFSLSWREFAANNSLQPNDLLVFKYSDDSGFDVGIVDPAISCETLHWISPGKLRHLNGVVRLSQLQRRK K

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032749 [exp]	0	1
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Lus10014415 [exp]	8.4	0.9280
					Lus10025421 [exp]	18.5	0.9188
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	24.2	0.9259
AT5G65030			unknown protein		Lus10026049 [exp]	26.8	0.9234
AT1G14160			Uncharacterised protein family...		Lus10037160 [exp]	27.5	0.9242
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	28.6	0.9216
					Lus10041676 [exp]	29.6	0.9195
AT4G18220			Drug/metabolite transporter su...		Lus10043396 [exp]	30.6	0.9140
AT3G10915			Reticulon family protein (.1.2...		Lus10029041 [exp]	41.6	0.9154
AT2G23450			Protein kinase superfamily pro...		Lus10011652 [exp]	45.8	0.9193

Compare expression of checked genes

Lus10032749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.