Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25900 619 / 0 ATKO1, CYP701A3, GA3 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) AT2G40890 188 / 2e-53 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT2G45560 184 / 3e-52 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT4G37430 183 / 9e-52 CYP81F1, CYP91A2 "cytochrome P450, family 91, subfamily A, polypeptide 2", CYTOCHROME P450 MONOOXYGENASE 81F1, cytochrome P450, family 91, subfamily A, polypeptide 2 (.1) AT5G57220 182 / 1e-51 CYP81F2 "cytochrome P450, family 81, subfamily F, polypeptide 2", cytochrome P450, family 81, subfamily F, polypeptide 2 (.1) AT3G10560 179 / 4e-50 CYP77A7, UNE9 UNFERTILIZED EMBRYO SAC 9, CYTOCHROME P450, FAMILY 77, SUBFAMILY A, POLYPEPTIDE 7, Cytochrome P450 superfamily protein (.1) AT4G37400 177 / 1e-49 CYP81F3 "cytochrome P450, family 81, subfamily F, polypeptide 3", cytochrome P450, family 81, subfamily F, polypeptide 3 (.1) AT5G07990 176 / 4e-49 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G37410 174 / 2e-48 CYP81F4 "cytochrome P450, family 81, subfamily F, polypeptide 4", cytochrome P450, family 81, subfamily F, polypeptide 4 (.1) AT3G26330 174 / 2e-48 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011667 [exp] 991 / 0 AT5G25900 624 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10042640 [exp] 801 / 0 AT5G25900 582 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10032747 [exp] 790 / 0 AT5G25900 592 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10042641 [exp] 783 / 0 AT5G25900 595 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10022898 [exp] 772 / 0 AT5G25900 567 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Lus10020847 [exp] 192 / 8e-55 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10033524 [exp] 192 / 9e-55 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10020437 [exp] 185 / 2e-52 AT4G37370 630 / 0.0 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Lus10007658 [exp] 179 / 5e-50 AT1G11600 663 / 0.0 "cytochrome P450, family 77, subfamily B, polypeptide 1", cytochrome P450, family 77, subfamily B, polypeptide 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129700 [exp] 710 / 0 AT5G25900 665 / 0.0 CYTOCHROME P450 701 A3, ARABIDOPSIS THALIANA ENT-KAURENE OXIDASE 1, GA requiring 3 (.1) Potri.006G033300 [exp] 201 / 2e-58 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031100 [exp] 196 / 1e-56 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.008G025500 [exp] 189 / 7e-54 AT5G04660 761 / 0.0 "cytochrome P450, family 77, subfamily A, polypeptide 4", cytochrome P450, family 77, subfamily A, polypeptide 4 (.1) Potri.016G031000 [exp] 182 / 2e-51 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.001G274600 [exp] 176 / 7e-49 AT5G07990 488 / 2e-169 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.013G125300 [exp] 176 / 7e-49 AT3G25180 522 / 0.0 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Potri.005G144000 [exp] 175 / 1e-48 AT5G36220 496 / 6e-173 CYTOCHROME P450 91A1, cytochrome P450, family 81, subfamily D, polypeptide 1, cytochrome p450 81d1 (.1) Potri.014G020500 [exp] 175 / 1e-48 AT4G37370 462 / 2e-159 "cytochrome P450, family 81, subfamily D, polypeptide 8", cytochrome P450, family 81, subfamily D, polypeptide 8 (.1) Potri.009G069100 [exp] 174 / 2e-48 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10032750 pacid=23158990 polypeptide=Lus10032750 locus=Lus10032750.g ID=Lus10032750.BGIv1.0 annot-version=v1.0 ATGGCTCCGGCAGCCGCTGCTGTGGGTGGAGTCGCCCTCTCCCTGTTTTTCATGAAGAAATTGATCCTCGATCACAGAAAGCCAAACAACTCTAATCTCC GCCTTGTTCCCGAGGTGCCCGGGATGCCGATGATCGGAAACTTGCTGCAGCTCAAGGAGAAGAAACCCCACAAGACTTTCGCTAAATGGGCTGAGACTTA CGGCCCCATCTACTCCATCAGAACTGGCTCCACCTCCGTCGTCGTCCTCAACACCACTGACGTTACTAAAGAGGCCATGGTGACCAAATTCTCGTCAATA AGTTCAAGAAAGCTACCAAAGGCTTTGACCGTACTGACTCAGGACAAAACCATGGTTGCTATGAGTGATTATGATGACTTCCACAAGATGGTGAAACGCC ACCTTCTCACTAATGTTTTGAGCCCAACCGCTCAGAAAAGGCATCGCTCCCACAGAGTGATAATGGTGGACAATCTAGCTAGCCAGTTGCAAGCTCAAGC CAAGGCTAATCCTGGACAGGCTTTCAATTTCAGGAAGATATTCGAGTCTGAACTCTTCGGCTTATCTATGAGACAAGCAATTGGAAAGGAATTGGAGTCT ATCTATGTTGAGGAATTGGAGACTACATTGTCCAGGGACGAAATCTTCAAAACTTTAGTGTTGGACCCAATGGATGGCGCCACAGAAGTGGACTGGAGGG AGTTCTTCCCGTACCTCAGCTGGATCCCCAATCCTGGCTTTGAACAAAAGATAGAGCAAATGCATTTTCGGAGGGATTCACTGATGAGTGCCTTGATCAG GGAACAAAAACAAAGGATAGCTTCCGGCGAGGCGGTTGATTGTTACGTCGACCACTTGTTGTCCGAGGCCAAGACCCTCACTGATCTCCAAATCAGGATG TTGATATGGGAGATGATTATTGAAACATCGGATACAATATTGGTCACTGCAGAGTGGGCTATGTATGAACTAGCCAAAAATCCTGAACGTCAAGATATGT TGTTTCAGCAAATTCGGAGTGAATGTGGGTCCGAGGATGTGTCTGAACAACACTTGTCAAAACTTCCATACCTAACTGCTATTTTCCACGAGACCCTTAG AAGGCATAGTCCTGTTCCTGTCATTCCTATGCGCCACGTGGATGAAGACACCGAGTTAGGAGGGTACCATGTCCCTGCCGGAACCGAGATAGCTATAAAC CTGTACGGATGCAATATGGATGACAAGCAATGGAAGAACCCTGAAGAATGGTTACCAGAGAGGTTCCTTAACGGCGGGTCTGATCCAATGGACCTACACA AAACAATGGCGTTTGGAAGCGGAAAGAGAGCTTGTGCCGGAGCTTACCAAGCAATGTTGGTTGTTTGCACATCGATAGGGAGAATGGCGCAGAAATTTGA GTGGAGCCTAAGGGAAGGGGAGAAAGATAATGTGGATACTGTAGCACTTACTGCAAGAAAACTTGAACCGTTGCACGCAATCGTCAAATCAAGATGTTAG
AA sequence Show only first row Show all	>Lus10032750 pacid=23158990 polypeptide=Lus10032750 locus=Lus10032750.g ID=Lus10032750.BGIv1.0 annot-version=v1.0 MAPAAAAVGGVALSLFFMKKLILDHRKPNNSNLRLVPEVPGMPMIGNLLQLKEKKPHKTFAKWAETYGPIYSIRTGSTSVVVLNTTDVTKEAMVTKFSSI SSRKLPKALTVLTQDKTMVAMSDYDDFHKMVKRHLLTNVLSPTAQKRHRSHRVIMVDNLASQLQAQAKANPGQAFNFRKIFESELFGLSMRQAIGKELES IYVEELETTLSRDEIFKTLVLDPMDGATEVDWREFFPYLSWIPNPGFEQKIEQMHFRRDSLMSALIREQKQRIASGEAVDCYVDHLLSEAKTLTDLQIRM LIWEMIIETSDTILVTAEWAMYELAKNPERQDMLFQQIRSECGSEDVSEQHLSKLPYLTAIFHETLRRHSPVPVIPMRHVDEDTELGGYHVPAGTEIAIN LYGCNMDDKQWKNPEEWLPERFLNGGSDPMDLHKTMAFGSGKRACAGAYQAMLVVCTSIGRMAQKFEWSLREGEKDNVDTVALTARKLEPLHAIVKSRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032750 [exp]	0	1
AT3G19980		STPP, ATFYPP3, ...	SERINE/THREONINE PROTEIN PHOSP...		Lus10013456 [exp]	3.7	0.8186
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10007334 [exp]	3.7	0.8330
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	4.2	0.8376
AT1G55760			BTB/POZ domain-containing prot...		Lus10008348 [exp]	6.3	0.8058
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	7.7	0.8306
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10028937 [exp]	7.7	0.8226
AT5G58320			Kinase interacting (KIP1-like)...		Lus10019111 [exp]	11.2	0.8221
AT1G10750			Protein of Unknown Function (D...		Lus10029116 [exp]	12.1	0.7343
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10027924 [exp]	13.5	0.7995
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10018400 [exp]	15.2	0.7448

Compare expression of checked genes

Lus10032750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.