Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06870 347 / 1e-112 Plsp2A plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) AT2G30440 334 / 3e-108 Plsp2B, TPP plastidic type I signal peptidase 2B, thylakoid processing peptide (.1) AT1G47310 308 / 2e-97 unknown protein AT3G24590 249 / 1e-76 PLSP1 plastidic type i signal peptidase 1 (.1) AT5G64510 110 / 2e-25 TIN1 tunicamycin induced 1, unknown protein AT1G23465 70 / 9e-14 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G29960 68 / 6e-13 AGL64 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G53530 64 / 2e-11 Peptidase S24/S26A/S26B/S26C family protein (.1.2) AT3G08980 63 / 2e-11 Peptidase S24/S26A/S26B/S26C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011672 [exp] 705 / 0 AT1G47310 312 / 7e-104 unknown protein Lus10011671 [exp] 234 / 3e-73 AT2G30440 172 / 7e-54 plastidic type I signal peptidase 2B, thylakoid processing peptide (.1) Lus10011670 [exp] 236 / 5e-72 AT1G06870 102 / 3e-25 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10023651 [exp] 232 / 3e-70 AT3G24590 318 / 2e-109 plastidic type i signal peptidase 1 (.1) Lus10034925 [exp] 231 / 2e-69 AT3G24590 316 / 1e-108 plastidic type i signal peptidase 1 (.1) Lus10020502 [exp] 111 / 8e-26 AT5G64510 555 / 0.0 tunicamycin induced 1, unknown protein Lus10012458 [exp] 110 / 2e-25 AT5G64510 543 / 0.0 tunicamycin induced 1, unknown protein Lus10002492 [exp] 60 / 5e-10 AT3G08980 191 / 5e-63 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10025393 [exp] 57 / 4e-09 AT1G53530 169 / 3e-54 Peptidase S24/S26A/S26B/S26C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036400 [exp] 435 / 7e-147 AT1G06870 377 / 8e-130 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.014G036300 [exp] 402 / 1e-133 AT1G47310 325 / 7e-109 unknown protein Potri.018G081800 [exp] 247 / 2e-75 AT3G24590 372 / 3e-130 plastidic type i signal peptidase 1 (.1) Potri.006G157900 [exp] 247 / 3e-75 AT3G24590 357 / 5e-124 plastidic type i signal peptidase 1 (.1) Potri.002G079600 [exp] 173 / 9e-50 AT3G24590 177 / 3e-55 plastidic type i signal peptidase 1 (.1) Potri.009G081500 [exp] 100 / 5e-22 AT5G64510 515 / 0.0 tunicamycin induced 1, unknown protein Potri.001G380400 [exp] 67 / 8e-13 AT1G53530 227 / 3e-77 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.005G092900 [exp] 67 / 9e-13 AT1G53530 189 / 5e-62 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.016G115100 [exp] 61 / 2e-10 AT3G08980 204 / 3e-68 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.007G071400 [exp] 60 / 4e-10 AT1G53530 194 / 7e-64 Peptidase S24/S26A/S26B/S26C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0299 [flax] [poplar] Peptidase_SF PF10502 [flax] [poplar] Peptidase_S26 Signal peptidase, peptidase S26
Representative CDS sequence Show only first row Show all	>Lus10032753 pacid=23159046 polypeptide=Lus10032753 locus=Lus10032753.g ID=Lus10032753.BGIv1.0 annot-version=v1.0 ATGGCTATCCGGGTAACCTTTTCGTTCTCGGGCTATGTCGCCCAAAACCTTGCTTCCTCCGCCGGTGCTCGCGTTGGAAACTGCCGGGCCTCGCTCACGG AGTGCTGGATTCGCTCTCGGATCTTCGCCACTCCGTCCAATCAGAGCGTGGATTCGGAACCTAACAAAGCCCGTGGTGGTTTCCAGCCGAGTCACCGAAG GACTCAGGCTTCTATGTACAGCACGATTGTCTCGGAGGCGCTCGGAAACAGCTCTAGCTCCCCGATCGCCTCTGGGTTGATCTCGCTCGTGAAGTCAACG GCTGGAATTTCATTTTCCTCGCCGTCGTCGTCGGCCGTGTTCGGAATTTCTCCAGTGAAAGCCGCCTCGATTCTTCCGTTTTTACAAGGATCGCGTTGGC TTCCATGTAACGAGCCCCCTGTTTCACCCAAGAGTCATGAGGTGGATAAAGGAGGGACAGTACAGTCCGTGGAGAATAAGGCTACAACTCGTGTGACCGT GGAGATTGACGACAAGGACTTTGCCAAGATTGGCAGCTGGTTGTCCCGGGTTTCAGAGGATGCTAAGGCCGTGTTTACAGCCGCCACTGTCAGTTTGTTG TTCCGGTCAACTCTCGCTGAGCCTAGATCAATTCCCACCACTTCTATGTATCCTACTCTGGATGTAGGAGACCGAGTGTTAGCAGAGAAGGTTTCTTATT TGTTCAGAAAGCCTGATGTTTCAGATATTGTAATATTCAAGGCACCTCCAATCATGCAGGAATATGGTTTCAGGTCAGGAGATGTGTTCATCAAAAGAGT AGTGGCTAAGGCTGGAGACATTGTTGAAGTCCGTGAGGGAAAATTATATGTCAATGGCGTTCCTGAAGATGAAGAGTTTGTCGTGGAACCACTTGCTTAT GAAATGGAACCTATGGTTGTGCCAGAAGGCTATGTTTTTGTGTTGGGTGACAATCGAAACAATAGCTTTGATTCTCACAACTGGGGTCCACTTCCTATCC AAAACGTTGTGGGTAGATCTGTGTTCCGTTACTGGCCTCCTTCCAAAGTCTCCAATATGATCTATGGTTCCCATGCTGAGAAGAGTGGTGAACACCATGG CTTCGTTGATCCAAATCTTCCCGGCCGCTCTCCTCTCGACCACCGATCACCTCTCCGCCTCGTCCGATTTCCATCAATGAACTGCTGCTGTTTATCCCTC TCTTTCCTCTTCCTCTGCTTCCACTCCACTCTCGCCTTTACTATCACCAGCAATACAACCCACATACTTCAGGATGTTGTAAAGGACATAGCCAAGAAGC AGAACTGGGATTGGGGAGGAATTCAGGTCTCTAAATTGGGGACGAGTAAAGTTAGGCTGGGTTCGTCTCAGAGATACGAGTTCCGAATCCGATTGGGCAA AGGTTACTTTCTTTTCAAGTTCCCTGACGATGATGTTGATATCTGGAGCAATAAGTTCGATAACGGAAGTAGAATTACTGGCGACAATGATGGTTTCCGG GATTTGGTAAACCAAGTTGGTTCCCTGCCGCTGCTCAATACTTTAAATCTCCAAGGTCCATTCGATTTGTGGGTAGCCGGCGGTGGACAGCTTTCCTTGT CATTACCGCTAAACATTACACACAGTAATCTGAAACATGTAGTTGTTGGAGAGGGTATAACCGTGGAAGTTAGCGGAGCTCAAGAGGTCTCTCTTTTTCA TGCTTTTGATTTCGGTTTCGTGGGGAATGGAAGTGTCATCAGAAACAAGGATCAGGATGGGTTTCGTGATTTCTTTCATGCTTTGTGCAAGCCATTAGTT CCAATACGTGTTCTTGGGTCTGTATCATTGAATGCCTTCAAGACCAAGAAACCAGGTGACGGCATCAAGACAGTTTTCTTGTCCGATAACATGATCAAGT TGCTTCTGGACAAGTGCTACAGGAGGAATGGTTACAAGGCAAAGGCTCGCCCTATTCAGTCTTTAGACTTGAGAATTGCTATGCTAGAACGTGTTTTCAG CAACTATCTCGGTGAAAGAATCAAGAATGATGGCCTATGGGGATTTATCAGAGCAACTCTTAAAGCATCACCGCTGATCCGCTTTCAGCTGGAGCTAGAA AAGACTTCAGAGAACAACAACAGGAGTCGTAACGCTGAGTGGAGGACAAAGCCATCAGTTGAACGTCTCTGGTTTGAGGTAACAGCAAGAGCTGAAGAGG AGAAGCTGAAGCCCATATTGGTCAAGAAGGTTCGGCCTTTCATTTCAGTTGATACAGCTTCCTGGAGTAATTTGATGTCAAATATCTCCTTTACTAAGTT CCCTTCTATACTTGTCCCTCCCGAGGCTTTAACACTAGATGTGAAATGGTAG
AA sequence Show only first row Show all	>Lus10032753 pacid=23159046 polypeptide=Lus10032753 locus=Lus10032753.g ID=Lus10032753.BGIv1.0 annot-version=v1.0 MAIRVTFSFSGYVAQNLASSAGARVGNCRASLTECWIRSRIFATPSNQSVDSEPNKARGGFQPSHRRTQASMYSTIVSEALGNSSSSPIASGLISLVKST AGISFSSPSSSAVFGISPVKAASILPFLQGSRWLPCNEPPVSPKSHEVDKGGTVQSVENKATTRVTVEIDDKDFAKIGSWLSRVSEDAKAVFTAATVSLL FRSTLAEPRSIPTTSMYPTLDVGDRVLAEKVSYLFRKPDVSDIVIFKAPPIMQEYGFRSGDVFIKRVVAKAGDIVEVREGKLYVNGVPEDEEFVVEPLAY EMEPMVVPEGYVFVLGDNRNNSFDSHNWGPLPIQNVVGRSVFRYWPPSKVSNMIYGSHAEKSGEHHGFVDPNLPGRSPLDHRSPLRLVRFPSMNCCCLSL SFLFLCFHSTLAFTITSNTTHILQDVVKDIAKKQNWDWGGIQVSKLGTSKVRLGSSQRYEFRIRLGKGYFLFKFPDDDVDIWSNKFDNGSRITGDNDGFR DLVNQVGSLPLLNTLNLQGPFDLWVAGGGQLSLSLPLNITHSNLKHVVVGEGITVEVSGAQEVSLFHAFDFGFVGNGSVIRNKDQDGFRDFFHALCKPLV PIRVLGSVSLNAFKTKKPGDGIKTVFLSDNMIKLLLDKCYRRNGYKAKARPIQSLDLRIAMLERVFSNYLGERIKNDGLWGFIRATLKASPLIRFQLELE KTSENNNRSRNAEWRTKPSVERLWFEVTARAEEEKLKPILVKKVRPFISVDTASWSNLMSNISFTKFPSILVPPEALTLDVKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06870		Plsp2A	plastidic type I signal peptid...		Lus10032753 [exp]	0	1
AT2G30440		Plsp2B, TPP	plastidic type I signal peptid...		Lus10011671 [exp]	2.0	0.8708
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Lus10017318 [exp]	4.7	0.8891
AT1G06870		Plsp2A	plastidic type I signal peptid...		Lus10011670 [exp]	8.5	0.7878
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10040912 [exp]	8.8	0.8510
AT5G35410		ATSOS2, CIPK24,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10019411 [exp]	9.7	0.8453
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10003308 [exp]	13.3	0.8223
AT3G09010			Protein kinase superfamily pro...		Lus10002494 [exp]	18.3	0.7920
AT1G49050			Eukaryotic aspartyl protease f...		Lus10032485 [exp]	21.2	0.8158
AT1G77220			Protein of unknown function (D...		Lus10018920 [exp]	27.3	0.8352
AT1G21780			BTB/POZ domain-containing prot...		Lus10029677 [exp]	27.9	0.8253

Compare expression of checked genes

Lus10032753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.