Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47710 487 / 9e-173 Serine protease inhibitor (SERPIN) family protein (.1) AT2G25240 394 / 6e-136 Serine protease inhibitor (SERPIN) family protein (.1) AT3G45220 383 / 7e-132 Serine protease inhibitor (SERPIN) family protein (.1) AT2G26390 372 / 2e-127 Serine protease inhibitor (SERPIN) family protein (.1) AT2G35580 334 / 1e-112 Serine protease inhibitor (SERPIN) family protein (.1) AT1G62170 330 / 3e-110 Serine protease inhibitor (SERPIN) family protein (.1), Serine protease inhibitor (SERPIN) family protein (.2) AT1G64030 327 / 1e-109 ATSRP3 serpin 3 (.1) AT2G14540 322 / 2e-107 ATSRP2 serpin 2 (.1) AT1G64010 185 / 4e-57 Serine protease inhibitor (SERPIN) family protein (.1) AT1G62160 132 / 1e-36 Serine protease inhibitor (SERPIN) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002792 [exp] 747 / 0 AT1G47710 495 / 6e-176 Serine protease inhibitor (SERPIN) family protein (.1) Lus10005089 [exp] 329 / 3e-110 AT1G47710 306 / 2e-101 Serine protease inhibitor (SERPIN) family protein (.1) Lus10034362 [exp] 305 / 9e-102 AT1G47710 274 / 1e-89 Serine protease inhibitor (SERPIN) family protein (.1) Lus10034364 [exp] 300 / 1e-98 AT1G47710 296 / 4e-97 Serine protease inhibitor (SERPIN) family protein (.1) Lus10019009 [exp] 228 / 4e-71 AT1G47710 209 / 9e-64 Serine protease inhibitor (SERPIN) family protein (.1) Lus10023541 [exp] 140 / 3e-39 AT1G62170 120 / 1e-31 Serine protease inhibitor (SERPIN) family protein (.1), Serine protease inhibitor (SERPIN) family protein (.2) Lus10040926 [exp] 131 / 9e-36 AT1G47710 115 / 2e-30 Serine protease inhibitor (SERPIN) family protein (.1) Lus10032600 [exp] 114 / 2e-29 AT1G47710 99 / 6e-24 Serine protease inhibitor (SERPIN) family protein (.1) Lus10039336 [exp] 87 / 6e-19 AT2G26390 105 / 2e-25 Serine protease inhibitor (SERPIN) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036000 [exp] 556 / 0 AT1G47710 476 / 1e-168 Serine protease inhibitor (SERPIN) family protein (.1) Potri.017G100900 [exp] 331 / 4e-111 AT1G47710 337 / 2e-113 Serine protease inhibitor (SERPIN) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00079 [flax] [poplar] Serpin Serpin (serine protease inhibitor)
Representative CDS sequence Show only first row Show all	>Lus10032754 pacid=23158947 polypeptide=Lus10032754 locus=Lus10032754.g ID=Lus10032754.BGIv1.0 annot-version=v1.0 ATGGATATCCGCGAGTTGATCGGTAGCCAAGCTGACGTCGCGTCAACTCTCTCCAAGCACCTTCTGCTCACTGAAGCCAAGAGCTCCAACGCGGTCCACT CCCCGCTCTCGATCCACGTCATCCTGAGCCTAATCGCCACCGGTTCCAAGGGCCCCACTCAAGATCAGCTGCTCTCTTTCCTCAAGGCCAAGTCCGGCGA CCATCTCAACGCCTTCTCCTCCGAGCTCATCTCCGTCGTTTTCGCCGACGGAACCGCTGCTGGAGGTCCAACCCTGTCTTTGGCTAACGGGGTTTGGGTC GACAAGTCCGTTTCCTTGAAGCAAACTTTCAAACAGGTTGTGGTCAATGTTTACAAGGCTGCTTCCGATCAAGTTGATTTCCAATCCAAGGCAGCTGAAG TAGCTAATGAAGTAAATAGTTGGGCCGAGAAAAAGACAAATGGCATTATCAAGGAAGTACTTCCTTCTGGTGCAGTTGATAACACAACAAGGCTCGTATT CGCGAATGCCCTCTACTTCAAAGGTGCTTGGAATGATAAGTTTGATGCATCAGCTACTAAGGACCATGATTTCCACCTCTTGAGTGGGAGTTCAGTCCGA GTACCTTTTATGACCAGCAAGAAGAAGCAATTTGTTTCCCAGTCTGCTGATTTTAAGGTCTTGTCCCTTCCTTACAAGCAAGGTGAAGACAAACGGCGAT TCTCAATGAACATCTTCCTTCCTGATTCTAAAGACGGGTTGCCTGCACTGGTCGAGAAGTTTGGATCTGAACCTGGTTTCCTGAATCGCCATGTTCCACA GCAGAAAGCAGAAGTGGGTGATTTCAAGATTCCAAGGTTCAAAATATCCTATGGATTTGAGGCTTCCAATACCCTCAAGGGACTAGGATTACTTCTGCCT TTCTCTAATGAAGCAGACTTGACTGAGATGGTGGACGCCTCTAGTAATCTAAGTGTGTCGAGCATATTCCACAAATCTTTCATCGAAGTGAATGAACAAG GCACAGAAGCTGGAGCTGCCTCTGTTGGTGTCATAGCTCTGAGAAGCTTGCGTGTACCTGAGAAGATTGACTTTGTCGCTGATCATCCATTCCTTTTCGT CATCAAAGAAGATCTGACTGGAGTTGTCCTGTTCAGCGGCCACATCCTTGATCCATCGCAGGCTTCTTAA
AA sequence Show only first row Show all	>Lus10032754 pacid=23158947 polypeptide=Lus10032754 locus=Lus10032754.g ID=Lus10032754.BGIv1.0 annot-version=v1.0 MDIRELIGSQADVASTLSKHLLLTEAKSSNAVHSPLSIHVILSLIATGSKGPTQDQLLSFLKAKSGDHLNAFSSELISVVFADGTAAGGPTLSLANGVWV DKSVSLKQTFKQVVVNVYKAASDQVDFQSKAAEVANEVNSWAEKKTNGIIKEVLPSGAVDNTTRLVFANALYFKGAWNDKFDASATKDHDFHLLSGSSVR VPFMTSKKKQFVSQSADFKVLSLPYKQGEDKRRFSMNIFLPDSKDGLPALVEKFGSEPGFLNRHVPQQKAEVGDFKIPRFKISYGFEASNTLKGLGLLLP FSNEADLTEMVDASSNLSVSSIFHKSFIEVNEQGTEAGAASVGVIALRSLRVPEKIDFVADHPFLFVIKEDLTGVVLFSGHILDPSQAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47710			Serine protease inhibitor (SER...		Lus10032754 [exp]	0	1
AT1G47710			Serine protease inhibitor (SER...		Lus10002792 [exp]	1.7	0.8190
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10004005 [exp]	7.1	0.7693
AT3G06780			glycine-rich protein (.1)		Lus10016828 [exp]	8.8	0.8089
AT5G06370			NC domain-containing protein-r...		Lus10029402 [exp]	12.5	0.7787
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10008499 [exp]	13.4	0.7589
AT2G31820			Ankyrin repeat family protein ...		Lus10027074 [exp]	15.0	0.7720
AT1G48040			Protein phosphatase 2C family ...		Lus10037832 [exp]	17.1	0.7674
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10018296 [exp]	22.3	0.7599
AT3G05500			Rubber elongation factor prote...		Lus10015171 [exp]	23.2	0.7577
AT3G10210			SEC14 cytosolic factor family ...		Lus10031044 [exp]	25.0	0.7512

Compare expression of checked genes

Lus10032754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.