Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21860 698 / 0 violaxanthin de-epoxidase-related (.1) AT1G08550 65 / 5e-11 AVDE1, NPQ1 ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, non-photochemical quenching 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002789 [exp] 609 / 0 AT2G21860 393 / 2e-134 violaxanthin de-epoxidase-related (.1) Lus10021986 [exp] 65 / 8e-11 AT1G08550 595 / 0.0 ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, non-photochemical quenching 1 (.1.2) Lus10042524 [exp] 63 / 3e-10 AT1G08550 592 / 0.0 ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, non-photochemical quenching 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G085800 [exp] 755 / 0 AT2G21860 700 / 0.0 violaxanthin de-epoxidase-related (.1) Potri.013G053100 [exp] 67 / 1e-11 AT1G08550 585 / 0.0 ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, non-photochemical quenching 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032756 pacid=23158956 polypeptide=Lus10032756 locus=Lus10032756.g ID=Lus10032756.BGIv1.0 annot-version=v1.0 ATGCCTCCGGAAGCATGTACGGTGCTACATCTCCGCCATTTCTCATCTCCATTAATGCTCAGCCGCCGCCTCGCCGCCATTACTATTCAACCTCCGTGCT ACCGCCACAGGGATGCATCCTCAGTTCTCTCCCTTCCTTCTCCTTTGTCTTTCCGTCCTCGCCCGACCAGAGTATCCGCCATTTTCGCGCCGGAAAATTG TACGGCTGCGGAGCAACCTGGGCTGCCTGTGAACATTGTGGCCATAGTTGGTGTAGGAAGCATTAGCCCTCTGAAATCCACTACATGGGAAGAGGTCATG CTCCACACTGCTACAAGGTTGAAATGGGTAGATGAAGGATATGAAATGCTGGTTTTCACTGACAATTTAGAGGAATCTGATGAAAATACCAAGATTTTGG AGAAGGAACTGAAGGGTGCTGATATATTGCTTCTAGTTGCTGTTACCAATCAAGGATCAGTTGATTGGATCCAGAACAAAAGCAAACATGTTCAGAACAT CATCTGTTTCGATTCCTCTTTGAAGCTTGCAAACAAGCTCGGTGGATCTTATGTTAAGGATGAGGGTAAAGAATCAAAGGAAATCGTGGAGACTGTGTCT GAAGCATGGACAAGGCATAACACGGATGACATAAGGTTCTGCTTATTGGTAGTCATCAATGCATATATAAGGCCAGTTCCTATTCTGAAGAACTTAAGAT CAAAAGGCTTATCAACTCTAAGCTGCATGGCCAAGAACTGTGGACGTCAGATATTGGATTGCCTACTGGATCCTAACTGCAGGAAGGCTCTTCAGTGCCT CAACCGTTGTAGCCCTGTAGACCAGGTCTGTAACTATAGATGCATCGCCTCGTACGAGAGTCCAAAGCTTGAGGCATTCTCTCTGTGTGTACTGCAGAAG CACAACTGTCTTGAATTGGATGCCAAGATTCCTCAACAGCCTCGTGTACAGCCGATGGTCAAGTTTCGAGGGCAGGACTTGACTCATGAGATAGCTGAGG ATCTCTTTGTGGGTTGGTTGGGGAGTCTTGAGTGGAGCTGGCGAGTCGTGGCTGGGCAGAACCCGGCTTACGATCAGTTTCCCTGTCAGTACCAGTTGTT TTACAGAGGTAAGGCAAAAGGATCATTTTGGTACGAGCCAGTTTTCCAAGTGAAGACGTTCGAAGGGGAGATGGTCTGGAGGCGGAGAAAGTATCGTGTC AAGCGAGGGAAAGCTCCGGGCACGTTCTACTTTAGTGTCTTGGACAATGGGGTGGTATCTAACGAGTTCTGGACGGTTATCCATGTTCCTGATGATTTAA GCTGGGGTCTGTTCCATTACAGCGGAGCTGCTCGAGCTGCAGGACAATCATATACTGGAGCAGTTCTTGTTAGTCCAGATGGGGCATTCCCGAGTACAAA AGAGAGTGAAAGAGTAGCTTCTGCCTTGGAAAGCTGTGGGATCAAGGAATGGGAGCTGTTTACAGTAGATAATTGTTCATGCCAAGATCCTCCTCTTGGA ATCCCAGATGGCTCAGCTTTGCATCTAGCAGTTGATGTTCGAGATAAGAAACTGAATCCCAGATAA
AA sequence Show only first row Show all	>Lus10032756 pacid=23158956 polypeptide=Lus10032756 locus=Lus10032756.g ID=Lus10032756.BGIv1.0 annot-version=v1.0 MPPEACTVLHLRHFSSPLMLSRRLAAITIQPPCYRHRDASSVLSLPSPLSFRPRPTRVSAIFAPENCTAAEQPGLPVNIVAIVGVGSISPLKSTTWEEVM LHTATRLKWVDEGYEMLVFTDNLEESDENTKILEKELKGADILLLVAVTNQGSVDWIQNKSKHVQNIICFDSSLKLANKLGGSYVKDEGKESKEIVETVS EAWTRHNTDDIRFCLLVVINAYIRPVPILKNLRSKGLSTLSCMAKNCGRQILDCLLDPNCRKALQCLNRCSPVDQVCNYRCIASYESPKLEAFSLCVLQK HNCLELDAKIPQQPRVQPMVKFRGQDLTHEIAEDLFVGWLGSLEWSWRVVAGQNPAYDQFPCQYQLFYRGKAKGSFWYEPVFQVKTFEGEMVWRRRKYRV KRGKAPGTFYFSVLDNGVVSNEFWTVIHVPDDLSWGLFHYSGAARAAGQSYTGAVLVSPDGAFPSTKESERVASALESCGIKEWELFTVDNCSCQDPPLG IPDGSALHLAVDVRDKKLNPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21860			violaxanthin de-epoxidase-rela...		Lus10032756 [exp]	0	1
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10004380 [exp]	2.0	0.9099
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10030949 [exp]	3.5	0.9023
AT1G66130			NAD(P)-binding Rossmann-fold s...		Lus10039898 [exp]	3.7	0.9035
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10027885 [exp]	6.5	0.8930
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10022748 [exp]	8.2	0.8654
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10018961 [exp]	8.7	0.9032
AT1G61667			Protein of unknown function, D...		Lus10020075 [exp]	10.4	0.8628
AT1G16080			unknown protein		Lus10024094 [exp]	11.4	0.8942
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10029809 [exp]	12.4	0.8752
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10025673 [exp]	13.7	0.8585

Compare expression of checked genes

Lus10032756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.