Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17570 344 / 1e-119 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G60510 267 / 1e-89 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G60500 265 / 1e-88 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58784 129 / 2e-35 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58770 127 / 1e-34 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58780 119 / 6e-32 Undecaprenyl pyrophosphate synthetase family protein (.1) AT2G23410 116 / 1e-30 ACPT cis-prenyltransferase (.1) AT5G58782 115 / 2e-30 Undecaprenyl pyrophosphate synthetase family protein (.1) AT2G23400 108 / 4e-28 Undecaprenyl pyrophosphate synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002788 [exp] 558 / 0 AT2G17570 342 / 9e-119 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10005789 [exp] 383 / 6e-134 AT2G17570 316 / 2e-107 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10036178 [exp] 140 / 7e-39 AT5G58770 357 / 7e-123 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10038313 [exp] 137 / 8e-39 AT5G58770 351 / 8e-122 Undecaprenyl pyrophosphate synthetase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G039400 [exp] 258 / 4e-86 AT2G17570 259 / 1e-86 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.005G100800 [exp] 259 / 2e-85 AT2G17570 243 / 2e-78 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.001G312700 [exp] 137 / 2e-38 AT5G58770 294 / 2e-99 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.001G250900 [exp] 118 / 2e-31 AT5G58770 313 / 1e-106 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.009G045500 [exp] 118 / 2e-31 AT5G58770 325 / 1e-111 Undecaprenyl pyrophosphate synthetase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01255 [flax] [poplar] Prenyltransf Putative undecaprenyl diphosphate synthase
Representative CDS sequence Show only first row Show all	>Lus10032757 pacid=23158937 polypeptide=Lus10032757 locus=Lus10032757.g ID=Lus10032757.BGIv1.0 annot-version=v1.0 ATGGATAAAGTTAATGGGAGATCCGTTGGGTTGCTGGGGAGGTGTAGTAGTTTTGTGAGAGCTTGCATGTTTAGAGTTCTATGTACAGGTCCAATCCCAA CCCATTACTCCTTCATAATGGACGGGAATCGCAGGTATGCTAAAAAGATGAACATGGAAGAAGGTGCAGGTCACAGGGCTGGTTTCTTTGCTCTCGTGTC TGTGCTCAAGTGCTGTTACGAACTGGGAGTGAAGTATATCTCGATCTATGCCTTTAGCATTGATAACTTCAAAAGGCGGCCTGATGAAGTGAAGACTATA ATGGATTTGATTCTAGAGAAGACTGAAGGTTTGCTTGAGGAAGGAAGTATTGCAGACCAGTACGGCGTCAGGGTGTACTTTGTTGGTAACTTGAAGCTCC TGAATGAGCGCATGAGAAATGCAGCTGAGGAGGTTATGAAGGCTACTGCACATAACACCAAGTGTGTGCTCTTGATATGCATAGCCTACACCTCCTACGA CGAGATTGTGCATTCTGTGCGGGAGTCTTGTAAAGACAAACTGGTGGAGATTGAATCAACATCTTGTGAAAATGGTGGGAACGAAGGTGATTATTCAGCG ATAAAAGTGGTTGACATAGAGAAACACATGTACATGGGAGTGGCTCCTGATCCGGACATCCTGCTGAGAAGCTCTGGGGAGATGCGGTTGAGCAACTACT TGCTGTGGCAAACCACTTACTGCACATTGTATTCTCCAAAAGCACTGTGGCCAGAGATTGGTCTATGGCATGTTGTATGGGGAATACTGAAATTCCAACG CACCTATGCTTACTTTGAGAAGAAGAAGAAGATAGCTTAG
AA sequence Show only first row Show all	>Lus10032757 pacid=23158937 polypeptide=Lus10032757 locus=Lus10032757.g ID=Lus10032757.BGIv1.0 annot-version=v1.0 MDKVNGRSVGLLGRCSSFVRACMFRVLCTGPIPTHYSFIMDGNRRYAKKMNMEEGAGHRAGFFALVSVLKCCYELGVKYISIYAFSIDNFKRRPDEVKTI MDLILEKTEGLLEEGSIADQYGVRVYFVGNLKLLNERMRNAAEEVMKATAHNTKCVLLICIAYTSYDEIVHSVRESCKDKLVEIESTSCENGGNEGDYSA IKVVDIEKHMYMGVAPDPDILLRSSGEMRLSNYLLWQTTYCTLYSPKALWPEIGLWHVVWGILKFQRTYAYFEKKKKIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17570			Undecaprenyl pyrophosphate syn...		Lus10032757 [exp]	0	1
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10011042 [exp]	1.4	0.9054
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10016609 [exp]	2.8	0.9003
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10003011 [exp]	4.9	0.8664
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10003159 [exp]	5.3	0.8677
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Lus10001748 [exp]	11.0	0.8251
AT3G22750			Protein kinase superfamily pro...		Lus10022076 [exp]	12.8	0.8578
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007284 [exp]	17.0	0.8571
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002978 [exp]	20.6	0.8808
AT5G07475			Cupredoxin superfamily protein...		Lus10012165 [exp]	24.0	0.8093
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Lus10038224 [exp]	29.2	0.8633

Compare expression of checked genes

Lus10032757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.