Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47720 74 / 3e-15 OSB1 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) AT5G44785 53 / 8e-08 OSB3 organellar single-stranded DNA binding protein 3 (.1.2) AT1G31010 40 / 0.0008 OSB4 organellar single-stranded DNA binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021767 [exp] 381 / 4e-133 AT1G47720 124 / 1e-31 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10018763 [exp] 60 / 3e-10 AT1G47720 109 / 3e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10002722 [exp] 59 / 4e-10 AT5G44785 57 / 2e-09 organellar single-stranded DNA binding protein 3 (.1.2) Lus10014728 [exp] 0 / 1 AT1G47720 106 / 3e-27 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Lus10024852 [exp] 0 / 1 AT1G47720 110 / 2e-28 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G035600 [exp] 134 / 3e-37 AT1G47720 158 / 6e-46 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.002G129166 [exp] 82 / 2e-18 AT1G47720 84 / 2e-19 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.005G218100 [exp] 74 / 4e-15 AT1G47720 114 / 6e-30 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1) Potri.001G394200 [exp] 49 / 2e-06 AT4G20010 269 / 7e-88 ORGANELLAR SINGLE-STRANDED DNA BINDING PROTEIN 2, plastid transcriptionally active 9 (.1.2) Potri.002G045100 [exp] 0 / 1 AT1G47720 112 / 2e-29 Organellar Single-stranded, Primosome PriB/single-strand DNA-binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00436 [flax] [poplar] SSB Single-strand binding protein family
Representative CDS sequence Show only first row Show all	>Lus10032760 pacid=23158986 polypeptide=Lus10032760 locus=Lus10032760.g ID=Lus10032760.BGIv1.0 annot-version=v1.0 ATGTACTATTACAAGTGGCGTTCATTCATGATCAAGCCCCGCCAACTCCGCTCCCTTCTCAGGGATGTCTCTGGATTCTCCATCCACAACCTAGCCGCTT TCTCCGCTTGGTCCGCTGCAAACCCTAGATTGCCTAATTTCTCTACCGATGAGGATGATTCTGGAGATAGCCGCAGCGAAGTTCTTCGACGAGCCGTCAC TAGCCGGCGGCCAGCCACCGTGAGATGGACTCCTCGTTTGGCTAATTCCGTTCAATTGATTGGCTCCGTTGAGCGTCCCGTCGAGACCTTAAACACCAAA AACGGCGGATTTGGAGTTTTCACTACACTCAGAGTGAAGAATCCCAACGGTTCCAAGCAGCTCACTTACAAGATTATGTTATTGGCTTGGGAAGAACTGG CAGAAATATGCATTAATCATGTGAAGCCTGGTGATTTTATCTATGTTTCAGGTATCTTGGGATTCTTCGATAATAAAGATGATTACGGTTCACAGCCCAA GATAACTGCGAAAGAATTGAATTTCGTTGATGTGTCATTGTATGGAAGTCACCCTAATGCAAGAAAAGCAGATGTGTCTGAGTCAGAAGGCCTTAAACAG AGTGATGAACAGCTGGTCAAGCTGAAATGCAAGTCTACCAAAACCATCTTTGGCAAGCATTCTTTTCTAACCCAGATAGATGGAGGGATGAGCGTACGAG CAAGAAGCAGCAATGGTCCCCTGATTTTGTTCACAAGGATAGCCGAGAAAGACTGCGGCTGA
AA sequence Show only first row Show all	>Lus10032760 pacid=23158986 polypeptide=Lus10032760 locus=Lus10032760.g ID=Lus10032760.BGIv1.0 annot-version=v1.0 MYYYKWRSFMIKPRQLRSLLRDVSGFSIHNLAAFSAWSAANPRLPNFSTDEDDSGDSRSEVLRRAVTSRRPATVRWTPRLANSVQLIGSVERPVETLNTK NGGFGVFTTLRVKNPNGSKQLTYKIMLLAWEELAEICINHVKPGDFIYVSGILGFFDNKDDYGSQPKITAKELNFVDVSLYGSHPNARKADVSESEGLKQ SDEQLVKLKCKSTKTIFGKHSFLTQIDGGMSVRARSSNGPLILFTRIAEKDCG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10032760 [exp]	0	1
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10036773 [exp]	13.7	0.7326
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10020165 [exp]	18.3	0.7179
AT3G50990			Peroxidase superfamily protein...		Lus10030940 [exp]	30.2	0.6818
AT4G39830			Cupredoxin superfamily protein...		Lus10036956 [exp]	30.3	0.7146
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10035547 [exp]	38.3	0.6651
AT1G11920			Pectin lyase-like superfamily ...		Lus10011257 [exp]	43.7	0.7010
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Lus10008443 [exp]	51.4	0.6268
AT1G60420			DC1 domain-containing protein ...		Lus10029148 [exp]	51.5	0.6932
AT5G42905			Polynucleotidyl transferase, r...		Lus10006008 [exp]	52.0	0.6574
					Lus10011203 [exp]	53.7	0.7043

Compare expression of checked genes

Lus10032760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.