Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66850 301 / 5e-92 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G53570 227 / 2e-65 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G63700 229 / 2e-64 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G54960 180 / 1e-48 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G09000 179 / 9e-48 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT3G06030 166 / 1e-43 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT4G08500 166 / 1e-43 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT4G08470 157 / 6e-41 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT3G07980 152 / 5e-38 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT4G12020 149 / 6e-37 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021766 [exp] 949 / 0 AT5G66850 452 / 7e-148 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10019635 [exp] 321 / 8e-100 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10009339 [exp] 316 / 2e-97 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10022461 [exp] 298 / 2e-87 AT5G66810 756 / 0.0 unknown protein Lus10016768 [exp] 257 / 2e-77 AT5G66850 460 / 3e-155 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10032279 [exp] 238 / 2e-67 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 234 / 3e-66 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 230 / 5e-65 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10002096 [exp] 225 / 3e-62 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129100 [exp] 331 / 4e-103 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 309 / 1e-94 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.007G039800 [exp] 302 / 3e-93 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G135100 [exp] 301 / 1e-92 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.001G102900 [exp] 238 / 2e-67 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 237 / 3e-67 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 234 / 4e-66 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.015G146700 [exp] 234 / 5e-66 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.007G106800 [exp] 229 / 6e-66 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.005G062500 [exp] 227 / 4e-65 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10032761 pacid=23159033 polypeptide=Lus10032761 locus=Lus10032761.g ID=Lus10032761.BGIv1.0 annot-version=v1.0 ATGGCGAGAGACGACGACGACGAGTCCTCTGACGGACTTGGAGGCAAGGGTTCGCCGGGGAATAACTCTAAGAAGAAGAAGAAGAAGCAGCAGCAGGTAG TGAGAAGACGAGTTGGGGTTTCGATGGATTTCACCAATTCATCTCCTCAACTGCCGAATTTCGATTCCCTGCCTCTTCCAACCCGGAATTCGGGTGGGAA TCCAATACCACAACGTGGACGGTCTTTTACCCAGAAGAGGCTTACCCGGCAGAAGAAGCTAAGGCACCTCAACGGCTGTCAGCTTGACAAGATGTTGAGT GAACGCCGTTCGAGTTCTCAGCCGGTTTCGCCGGAGTCGTCCTCGCAGAAGCCGCCGTCTCCGGGAGACGGGTCGGGTAACTCGTCGTGGCGGTATTTTC CGGTGCCCCAACCGTTACCGTTGCCGCGGCGAAATTTGCACCGGAGGCTACAATCCGCTGGGTCTAATTGGGGCCACCAACAAACCAGGTCGCCGGTAGA TGGCCCGTTCTCTTCTTACAGAAGAAAGGTCCGGTACTTCAGCGAACAAGAGATCGTCTCTCGCGGTCGTTTGCTCTCGCCGCCACCGTCGCCGGGTTTC ACTGCCAAGACATCCCCAGAAAAGTCGGACTGTCGTTCTCTATCACCGTTGCCGCAGCCATTGCCGCTTCCTGATTCGTCATTGAATAGAAGGCCTGAGT CTCCAGCTCGTCATATATTGGGATCTGATCTTCTCCGGTCACCGGATTGTGGTGGGAAACGGTCCTATTCAAGGAAGAACAGCAGTGATCAGAATGAGAT CGCCACAAAGCCAGCTTTAAAACCTCTAAGCAATTGCCAAGAAAGCGGAGGAAGTACGGCTGTTAACTCCATCCCGAGTTCCTTACCCAGATGTTCATCC ACGAGTTGCTTCGCAAACCTCTTCCCTTCTTCTCGGCTCCCAGCTGCAGAATCTTCTAAATCTTTGAGCAGTCGTCGTAAGGACCTTCCTAAAGATCTGA CTATCTGCCTTTCCTGCAAAAATGGTGCAGTTCAGTCTCCACAGAGTACTTCATCGGGCAGCGGTTGCTCCAGTCAAGCTGTCAGCCCACAGAGGTCACC AACTCCTCCTGGTCCCGGAAATCAATGTCCTGACGAAGTTCATTTTCGTCCTGATTTTGAGATTCCAGACTTTAGGTTATCTGGTAATAGCTCACCATCG TCCTTAGTGAAACATGTGCAGCAATGTAGTCGTGATATTTCCCCACTCCATAGCCCAACTATACCAAGTGCTTTCTCCAACCCAGGAAGTCCAACTATAT CTGCACGGCATCAAAGCAAATCAGGTCCTTTGAGTTGTAAAGATTCCCCTGAAAGCAGCAATCAGCTCAATCCTTACCCATTGCCCTTACCTCCTTTGGT TATATCTCCAACACAGTCGCGTATCCCATCTCCATTGCTGTCACCTGTTAGCCATACTAGAGTAGAAAATGTACCGACGTTGATGAAAAGGAATCAATGG CAGAAAGGCAAGCTTATTGGTCGTGGCACATATGGAAGTGTTTATGTGGGGACTAACAGAGAGACTGGAGCTCTGTGTGCAATAAAGGAAGTTGACCTTA TCCATGACGATCCTAAATCGGACGAATGTGTAAGGCAATTAGAGCAGGAAATTAAAGTTCTCCGGCATCTGAAGCATCCTAACATAGTCCAGTATCTTGG CAGTGAGACGGTTGAAAATCACTTCAACATATATCTAGAGTATGTTCATCCTGGGTCGATAAGCAAATATGTCCAGGAACACTGTGGAGCTATTACAGAA TCAATAGTCCGCAACTTCACCCGTCATATTCTCTCTGGACTGGCATTTTTGCACCGGACAAAGACCATCCATAGGGATATCAAAGGTGCAAATTTGTTAG TTGATGCATCAGGTACAGTTAAGCTTGCAGATTTTGGGATGGCAAAACATCTCGCAGGCATCTCATATCAACTGTCTCTGAAAGGAAGTCCACATTGGAT GGCTCCAGAGGTAATATTCCATGTTTAA
AA sequence Show only first row Show all	>Lus10032761 pacid=23159033 polypeptide=Lus10032761 locus=Lus10032761.g ID=Lus10032761.BGIv1.0 annot-version=v1.0 MARDDDDESSDGLGGKGSPGNNSKKKKKKQQQVVRRRVGVSMDFTNSSPQLPNFDSLPLPTRNSGGNPIPQRGRSFTQKRLTRQKKLRHLNGCQLDKMLS ERRSSSQPVSPESSSQKPPSPGDGSGNSSWRYFPVPQPLPLPRRNLHRRLQSAGSNWGHQQTRSPVDGPFSSYRRKVRYFSEQEIVSRGRLLSPPPSPGF TAKTSPEKSDCRSLSPLPQPLPLPDSSLNRRPESPARHILGSDLLRSPDCGGKRSYSRKNSSDQNEIATKPALKPLSNCQESGGSTAVNSIPSSLPRCSS TSCFANLFPSSRLPAAESSKSLSSRRKDLPKDLTICLSCKNGAVQSPQSTSSGSGCSSQAVSPQRSPTPPGPGNQCPDEVHFRPDFEIPDFRLSGNSSPS SLVKHVQQCSRDISPLHSPTIPSAFSNPGSPTISARHQSKSGPLSCKDSPESSNQLNPYPLPLPPLVISPTQSRIPSPLLSPVSHTRVENVPTLMKRNQW QKGKLIGRGTYGSVYVGTNRETGALCAIKEVDLIHDDPKSDECVRQLEQEIKVLRHLKHPNIVQYLGSETVENHFNIYLEYVHPGSISKYVQEHCGAITE SIVRNFTRHILSGLAFLHRTKTIHRDIKGANLLVDASGTVKLADFGMAKHLAGISYQLSLKGSPHWMAPEVIFHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10032761 [exp]	0	1
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10021766 [exp]	1.0	0.8598
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005142 [exp]	2.8	0.8230
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10030467 [exp]	3.5	0.7813
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10012885 [exp]	6.7	0.7962
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10032778 [exp]	10.0	0.7851
AT5G17570			TatD related DNase (.1)		Lus10017234 [exp]	10.7	0.7818
AT2G41790			Insulinase (Peptidase family M...		Lus10042064 [exp]	17.3	0.7749
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Lus10029471 [exp]	18.4	0.7399
AT2G18750			Calmodulin-binding protein (.1...		Lus10029852 [exp]	18.7	0.7512
AT2G41790			Insulinase (Peptidase family M...		Lus10018071 [exp]	20.8	0.7635

Compare expression of checked genes

Lus10032761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.