Plant FIBer expression Database

Lus10032762 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G26520 77 / 6e-19 unknown protein
AT3G57500 62 / 2e-13 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021765
[exp]
171 / 6e-56 AT2G26520 79 / 7e-20 unknown protein
Lus10020993
[exp]
64 / 6e-14 AT2G26520 67 / 2e-15 unknown protein
Lus10023859
[exp]
58 / 1e-11 AT2G26520 66 / 5e-15 unknown protein
Lus10012197
[exp]
37 / 0.0007 AT3G57500 68 / 6e-16 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G035400
[exp]
114 / 7e-34 AT2G26520 86 / 3e-22 unknown protein
Potri.009G106300
[exp]
94 / 9e-26 AT2G26520 77 / 4e-19 unknown protein
Potri.004G144400
[exp]
93 / 4e-25 AT2G26520 81 / 3e-20 unknown protein
Potri.006G052500
[exp]
50 / 6e-09 AT3G57500 68 / 7e-16 unknown protein
PFAM info
Representative CDS sequence
>Lus10032762 pacid=23158980 polypeptide=Lus10032762 locus=Lus10032762.g ID=Lus10032762.BGIv1.0 annot-version=v1.0
ATGCCTTTAGGGCAGCAGCAGGGACCACTGGTGAATGTCAACCCACAATCATTCGCCGGCATCCACTCGTCATCCCACCCTTCGGTCGGGCCTGTAATTG
CAGTGCTGGTGGTGATCATGATTCTGGGAATTGCAGCAGTGATGATTGGAAGGATGTGTTCTGGGAGGAGGATACTGGGTTACGGCCAATACGACATTGA
AGGATGGGCTGAGACCAAGTGTTCAACTTGCATTGATGGAAGGATTACTCCTTCTCCTCCTCCTCTTCCGCGGCCTCCTACACCGCCTGCTACTACTGCT
CCTCCTCCACCACTTGGGGACAGTGACAATGCCGCTTCTCACGGCGAGAATGATGATGAAGAGGACGAAAGTGGAGGTAGTTCATCACCCACCTGA
AA sequence
>Lus10032762 pacid=23158980 polypeptide=Lus10032762 locus=Lus10032762.g ID=Lus10032762.BGIv1.0 annot-version=v1.0
MPLGQQQGPLVNVNPQSFAGIHSSSHPSVGPVIAVLVVIMILGIAAVMIGRMCSGRRILGYGQYDIEGWAETKCSTCIDGRITPSPPPLPRPPTPPATTA
PPPPLGDSDNAASHGENDDEEDESGGSSSPT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G26520 unknown protein Lus10032762
[exp]
0 1
AT5G23570 SGS3, ATSGS3 SUPPRESSOR OF GENE SILENCING 3... Lus10019214
[exp]
2.0 0.8872
AT2G26520 unknown protein Lus10021765
[exp]
5.3 0.9198
AT1G49320 ATUSPL1 unknown seed protein like 1 (.... Lus10006665
[exp]
5.4 0.8294
AT1G75820 ATCLV1, FLO5, F... FLOWER DEVELOPMENT 5, FASCIATA... Lus10013562
[exp]
5.7 0.8557
Lus10007141
[exp]
9.6 0.8660
AT5G60710 Zinc finger (C3HC4-type RING f... Lus10041321
[exp]
11.0 0.8130
AT1G31710 Copper amine oxidase family pr... Lus10004912
[exp]
11.6 0.8089
AT5G19650 OFP ATOFP8, OFP8 ovate family protein 8 (.1) Lus10043243
[exp]
13.4 0.8455
AT1G18650 PDCB3 plasmodesmata callose-binding ... Lus10021619
[exp]
14.0 0.8585
AT3G06868 unknown protein Lus10001474
[exp]
16.3 0.8397

Lus10032762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.