Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06430 120 / 3e-35 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021764 [exp] 225 / 1e-76 AT5G06430 255 / 2e-87 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G035300 [exp] 127 / 6e-38 AT5G06430 251 / 1e-85 Thioredoxin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032763 pacid=23159031 polypeptide=Lus10032763 locus=Lus10032763.g ID=Lus10032763.BGIv1.0 annot-version=v1.0 ATGAAAACCGACGCAGCTCCTCCAAAGCATCCTCTCTTCTGTCTAACATGGCCTTGGGACCAGAATCACAAAACTAGCCCCAACGCCTGCTCTTACGAGG GTCCATGGCTGCTGAAATCCCTCAGCACTCTGGACTCCATTGCCCTAAAATCCATAAACTCGGTCTCCAATTCGTCGGCGAATGGGAAAGGAAAGAGAAG TGCGGAAGAGCAGGCTGAGGCGGAGCAAAGAGCGTTTGCTTCGGCTCTGGCTGGCGGGAAAGAGGCAACGGTGCTTGAATTTTACTCCCCCAAGTGTATG CTCTGCAACTCATTGGTCAATTTGGTGACGGAGGTGGAGAGGAGAAACTGGGATTGGGTCAACATTGTGATGGCCGATGCAAAGAATGAACAATGGCTGC CTGAGATAAAGTAA
AA sequence Show only first row Show all	>Lus10032763 pacid=23159031 polypeptide=Lus10032763 locus=Lus10032763.g ID=Lus10032763.BGIv1.0 annot-version=v1.0 MKTDAAPPKHPLFCLTWPWDQNHKTSPNACSYEGPWLLKSLSTLDSIALKSINSVSNSSANGKGKRSAEEQAEAEQRAFASALAGGKEATVLEFYSPKCM LCNSLVNLVTEVERRNWDWVNIVMADAKNEQWLPEIK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06430			Thioredoxin superfamily protei...		Lus10032763 [exp]	0	1
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Lus10013222 [exp]	1.7	0.8109
AT5G07610			F-box family protein (.1)		Lus10015048 [exp]	6.3	0.7711
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10002561 [exp]	17.3	0.7390
AT3G56330			N2,N2-dimethylguanosine tRNA m...		Lus10029044 [exp]	63.3	0.7526
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10012615 [exp]	73.1	0.7346
AT1G64810		APO1	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039122 [exp]	76.7	0.7274
AT2G38420			Pentatricopeptide repeat (PPR)...		Lus10002476 [exp]	99.5	0.7249
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10043223 [exp]	100.4	0.6918
					Lus10039851 [exp]	117.7	0.6908
					Lus10029579 [exp]	130.2	0.7061

Compare expression of checked genes

Lus10032763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.