Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26530 134 / 2e-36 AR781 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) AT2G15760 64 / 3e-11 Protein of unknown function (DUF1645) (.1) AT3G62630 57 / 5e-09 Protein of unknown function (DUF1645) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021757 [exp] 508 / 0 AT2G26530 194 / 2e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10006479 [exp] 140 / 1e-38 AT2G26530 133 / 4e-37 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10032881 [exp] 140 / 1e-38 AT2G26530 129 / 2e-35 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10014025 [exp] 91 / 3e-20 AT2G15760 203 / 8e-63 Protein of unknown function (DUF1645) (.1) Lus10019892 [exp] 91 / 5e-20 AT2G15760 202 / 2e-62 Protein of unknown function (DUF1645) (.1) Lus10012069 [exp] 86 / 1e-18 AT2G15760 171 / 4e-51 Protein of unknown function (DUF1645) (.1) Lus10027912 [exp] 77 / 2e-15 AT2G15760 166 / 1e-48 Protein of unknown function (DUF1645) (.1) Lus10029855 [exp] 57 / 1e-08 AT3G62630 236 / 2e-74 Protein of unknown function (DUF1645) (.1) Lus10020690 [exp] 56 / 2e-08 AT3G62630 232 / 1e-72 Protein of unknown function (DUF1645) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G034900 [exp] 262 / 3e-85 AT2G26530 174 / 1e-51 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.002G128500 [exp] 246 / 4e-79 AT2G26530 191 / 4e-58 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.009G105400 [exp] 144 / 1e-39 AT2G15760 100 / 6e-24 Protein of unknown function (DUF1645) (.1) Potri.004G143500 [exp] 112 / 5e-28 AT2G15760 137 / 1e-37 Protein of unknown function (DUF1645) (.1) Potri.013G010400 [exp] 60 / 1e-09 AT3G62630 199 / 7e-60 Protein of unknown function (DUF1645) (.1) Potri.005G019600 [exp] 59 / 2e-09 AT3G62630 218 / 5e-67 Protein of unknown function (DUF1645) (.1) Potri.010G041300 [exp] 42 / 0.0004 AT1G23710 169 / 5e-51 Protein of unknown function (DUF1645) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [flax] [poplar] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Lus10032766 pacid=23159005 polypeptide=Lus10032766 locus=Lus10032766.g ID=Lus10032766.BGIv1.0 annot-version=v1.0 ATGTCGAGAATGGAAGTTGTGTTACCTTCATCACCAGGCGGAGGCATGGGTTTCAATTTCAACGACGCAAGACCGCTGCCGTTCCTCAGCGCTCCAACTT CCCCACGGCGGTTCGGAGATTTCTCACTGAGTGCTCCCACGAGCCCTTCTCGCATGGCGGAGTTCTACCGCAGCTTTGAGGATTTTTCCATCATGGGACA ACAATATAGAGAAGATGAAGATGATCAGAACGGCGTACCTTTCCATTGGGAAGAGAGGCCAGGAACGCCCAAGTCTCCCAGGAAGCTTCCCTCGTTCAAG GATGAAGATTTTGCTTTCGATTTCAGCGCGGATATGGAGAAGGAATCTCTCCCTGCCGACGAGCTTTTCGACGGGGGTAAGATTCGGCCTTTGAAGCTCC CCCCACGGTTGTTACAGGTGGAAGACATAAAGTCACCGCTTTTGTCTTCTTCGCCCAGGTCTCCCAGGTCGCCTATTGAGAAAGGGAAGAGGATCATAAT TGGAGCCTTGTCGCCAAGGAAGAAGAAAGTCTCGGATCCTTTTCAAGCTGCAATGGAGATTAATGCTCAGAAGGTGAACAATGAAAGAGGGAGAACTTCG GATCTCACCTCGAGTTCAAGCCGTAGAGGAAAGACAAGATCTCTTTCTCCTTACAGAGTTTCACAGTATCCATGGGAGGAAGATGAAAGACACCAGCAGC AGCAACAACAACAACAACAAGCTGTAACTGCTATGAAGAGTTCTTCGAGGAAGTGGAGATTCAGGGATCTGCTCTTGTTCAGAAGTGCATCAGAAGGAAG AGCTTCGGACAGAGATACTTACAGGAAGCATGCTGCGTCTTTCGGTCTGTTCAGGAGACATGATGACGTCAAAAGCTGCAGCATCCGGTCATCGGATAGC TCTGGTTCGAATTCTGGGTCGAGGAGGAAAGCACCGGTTTCAGCCCATGAGTTGCATTACACTACCAACAAAGCTGCATCAGAGGGTCTGAGGAAGAAGA CTTTCTTGCCTTACAAACAGGGGATTCTAGGCAGATTGGCATTCAGTCCATCTCATTCTCGATAA
AA sequence Show only first row Show all	>Lus10032766 pacid=23159005 polypeptide=Lus10032766 locus=Lus10032766.g ID=Lus10032766.BGIv1.0 annot-version=v1.0 MSRMEVVLPSSPGGGMGFNFNDARPLPFLSAPTSPRRFGDFSLSAPTSPSRMAEFYRSFEDFSIMGQQYREDEDDQNGVPFHWEERPGTPKSPRKLPSFK DEDFAFDFSADMEKESLPADELFDGGKIRPLKLPPRLLQVEDIKSPLLSSSPRSPRSPIEKGKRIIIGALSPRKKKVSDPFQAAMEINAQKVNNERGRTS DLTSSSSRRGKTRSLSPYRVSQYPWEEDERHQQQQQQQQQAVTAMKSSSRKWRFRDLLLFRSASEGRASDRDTYRKHAASFGLFRRHDDVKSCSIRSSDS SGSNSGSRRKAPVSAHELHYTTNKAASEGLRKKTFLPYKQGILGRLAFSPSHSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26530		AR781	Protein of unknown function (D...		Lus10032766 [exp]	0	1
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10011820 [exp]	2.0	0.8916
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021185 [exp]	2.4	0.8687
AT2G19130			S-locus lectin protein kinase ...		Lus10032944 [exp]	2.4	0.8567
AT5G25930			Protein kinase family protein ...		Lus10005491 [exp]	2.8	0.8325
AT2G19130			S-locus lectin protein kinase ...		Lus10024348 [exp]	3.5	0.8385
AT3G47570			Leucine-rich repeat protein ki...		Lus10009394 [exp]	4.6	0.7797
AT2G38470	WRKY	ATWRKY33, WRKY3...	WRKY DNA-binding protein 33 (....		Lus10026409 [exp]	4.9	0.8476
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10039344 [exp]	5.0	0.8471
AT2G34930			disease resistance family prot...		Lus10002757 [exp]	5.1	0.7993
AT4G37420			Domain of unknown function (DU...		Lus10030740 [exp]	7.1	0.8276

Compare expression of checked genes

Lus10032766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.