Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42690 446 / 3e-152 Protein of unknown function, DUF547 (.1.2.3) AT4G37080 410 / 2e-137 Protein of unknown function, DUF547 (.1.2.3) AT2G39690 214 / 1e-63 Protein of unknown function, DUF547 (.1.2) AT3G12540 211 / 2e-61 Protein of unknown function, DUF547 (.1) AT5G60720 179 / 1e-48 Protein of unknown function, DUF547 (.1) AT1G16750 145 / 2e-37 Protein of unknown function, DUF547 (.1) AT5G66600 140 / 2e-35 Protein of unknown function, DUF547 (.1.2.3.4) AT5G47380 137 / 2e-34 Protein of unknown function, DUF547 (.1) AT2G23700 137 / 3e-34 Protein of unknown function, DUF547 (.1) AT3G13000 133 / 3e-33 Protein of unknown function, DUF547 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021756 [exp] 962 / 0 AT4G37080 488 / 2e-166 Protein of unknown function, DUF547 (.1.2.3) Lus10021450 [exp] 214 / 3e-61 AT5G60720 541 / 0.0 Protein of unknown function, DUF547 (.1) Lus10016114 [exp] 187 / 2e-55 AT5G60720 308 / 6e-101 Protein of unknown function, DUF547 (.1) Lus10022480 [exp] 152 / 3e-39 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10016786 [exp] 152 / 3e-39 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10033328 [exp] 140 / 2e-35 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10034787 [exp] 137 / 5e-34 AT3G13000 710 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10037293 [exp] 129 / 1e-31 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10039917 [exp] 122 / 3e-29 AT1G16750 457 / 1e-155 Protein of unknown function, DUF547 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G034800 [exp] 611 / 0 AT5G42690 476 / 4e-163 Protein of unknown function, DUF547 (.1.2.3) Potri.007G041100 [exp] 453 / 8e-154 AT4G37080 577 / 0.0 Protein of unknown function, DUF547 (.1.2.3) Potri.002G128400 [exp] 416 / 3e-141 AT5G42690 316 / 2e-102 Protein of unknown function, DUF547 (.1.2.3) Potri.010G202900 [exp] 225 / 1e-66 AT2G39690 493 / 9e-171 Protein of unknown function, DUF547 (.1.2) Potri.009G009500 [exp] 223 / 2e-65 AT5G60720 537 / 0.0 Protein of unknown function, DUF547 (.1) Potri.005G136350 [exp] 174 / 4e-52 AT4G37080 211 / 2e-66 Protein of unknown function, DUF547 (.1.2.3) Potri.007G033100 [exp] 156 / 7e-41 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.005G130000 [exp] 154 / 4e-40 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.001G157200 [exp] 140 / 1e-35 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1) Potri.007G003900 [exp] 134 / 2e-33 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04784 [flax] [poplar] DUF547 Protein of unknown function, DUF547
Representative CDS sequence Show only first row Show all	>Lus10032768 pacid=23158994 polypeptide=Lus10032768 locus=Lus10032768.g ID=Lus10032768.BGIv1.0 annot-version=v1.0 ATGTCGATATCTGGGGGAAACCAGAAAACAATACAGCAGCAGGGAAGCAATCAAATTGATGGAGCCAGCAATTCAACCAAATCCCGCAAGGCTGGCACAA GCAGAGACAGGAAGATGGCTCTGCAACAGGATGTGGATAAGCTGAGGAAGAAGCTAAGATACGAAGAGAATGTCCACAGAGCGCTGGAGAGAGCTTTCAA TAGACCGCTGGGAGCGCTTCCTCGCCTCCCTGCTTATCTTCCCTCTTCTACACTGGAGCTCCTAGCTGAAGTGGCAGTGCTGGAAGAGGAAGTTGTGCGG CTGGAAGAGCAGGTGGTTCATTTCAGACAGGACTTGTATCAGGAAGCTGTCTACATTTCCACCTCTAAGACGAAGAACAACGTCGAGAGTTTAGCCGATT TATACGATTCGGTTCCGAGAAAGAATCCGCAGGATAGAAGCTGCAGCAATGAGTCCACATCCAAACACTTAAGGAAAGATGAAGAGCTGGGGAAAGAAAA CCAATTGGCTTCTTCTAATTTCGAAAGAAAGGTCAAGGGATCATCACCATCAGCATCAGCTCATAATGCTCAGACGATTCGAACTCCGGTGAAACTAGTT GATCGTAATAATAAACAGGAGAAGCGTTTTTCTCCTCAGAAACAACAGCTGAAAAAACCAGAAGGTAGAAGCAGCATTGGGATCACACTGGTAGATGACA ACCCGAACAAGATTTCAGAAGATATTTTAAAATGTTTGTGTAGCATTTTCACAAGGATGAGCACGATGAAGAACAGGCAGACAGTGGATGATTTGCCATT CTTGTCCACTTCAGTAGATGAGAGGTGGGATGATCCTTATGGGATATGTACAGAATTCAGGAGGAGAGACGTCGGTCCGTATAAGAATTTATTAGCGATT GAGCCTTACAATATCAATCCCAACAGAACATCCAACACTTTGTTTCTTCTCCATAGACTCAAGCTCTTACTTAGTAAACTTGCCGGTGTCAACTTGGAGA AACTGAGCCATCAGGAGAAACTGGCTTTTTGGATAAACATATACAATTCCTGCATGATGAATGCATTTCTTGAGTATGGAATACCAGAAAACCCGGAGAT GGTTGTTGCTGTAATGAGACAGGCAACAATAAATGTTGGGGGACACTTGCTTACTGCAATAACCATTGAACACTTCATTCTCAGATTGCCTTATCATTCC AAATATGCATTTTCAAAGGGGTCTAAGAACGATGAGATGACAGCAAGAAGTAAATTCGGTTTGGAGTTATCTGAACCACTGGTAACATTTGCCCTTTCAT GTGGAAGTTGGTCTTCCCCAGCAGTGAGAGTTTATACTGCATCCCAAGTTGAGAATCAACTGGAGGCAGCCAAAAAGGAGTACTTGCAAGCAGCCATTGG GATTTCAGCTCACAAATTCACAATCCCAAAGATGTTGGATTGGTATCTACTAGACTTTGCAAAGGACCTGGACTCATTGTTGGACTGGATTTGCCTTCAG CTACCAAGTGAACTTGGGAAAGAAGCAATCAAGTCACTTGACAGAGGTAAGTCTCGGACAAATCCACAAATCATCCAGATAATGCCCTATGAGTTTAGTT TCAGGTACCTTTTGTACATGCCTTGGTAA
AA sequence Show only first row Show all	>Lus10032768 pacid=23158994 polypeptide=Lus10032768 locus=Lus10032768.g ID=Lus10032768.BGIv1.0 annot-version=v1.0 MSISGGNQKTIQQQGSNQIDGASNSTKSRKAGTSRDRKMALQQDVDKLRKKLRYEENVHRALERAFNRPLGALPRLPAYLPSSTLELLAEVAVLEEEVVR LEEQVVHFRQDLYQEAVYISTSKTKNNVESLADLYDSVPRKNPQDRSCSNESTSKHLRKDEELGKENQLASSNFERKVKGSSPSASAHNAQTIRTPVKLV DRNNKQEKRFSPQKQQLKKPEGRSSIGITLVDDNPNKISEDILKCLCSIFTRMSTMKNRQTVDDLPFLSTSVDERWDDPYGICTEFRRRDVGPYKNLLAI EPYNINPNRTSNTLFLLHRLKLLLSKLAGVNLEKLSHQEKLAFWINIYNSCMMNAFLEYGIPENPEMVVAVMRQATINVGGHLLTAITIEHFILRLPYHS KYAFSKGSKNDEMTARSKFGLELSEPLVTFALSCGSWSSPAVRVYTASQVENQLEAAKKEYLQAAIGISAHKFTIPKMLDWYLLDFAKDLDSLLDWICLQ LPSELGKEAIKSLDRGKSRTNPQIIQIMPYEFSFRYLLYMPW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37080			Protein of unknown function, D...		Lus10032768 [exp]	0	1
					Lus10024153 [exp]	4.2	0.8472
AT3G44716			unknown protein		Lus10020554 [exp]	5.5	0.8591
AT2G41200			unknown protein		Lus10032687 [exp]	6.6	0.8564
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	7.7	0.8468
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10020877 [exp]	9.2	0.8401
AT3G18500			DNAse I-like superfamily prote...		Lus10036357 [exp]	9.9	0.8336
AT2G41790			Insulinase (Peptidase family M...		Lus10042064 [exp]	11.2	0.8167
AT3G23700			Nucleic acid-binding proteins ...		Lus10021484 [exp]	13.4	0.8286
AT2G41200			unknown protein		Lus10008568 [exp]	15.4	0.8362
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10040192 [exp]	15.7	0.8234

Compare expression of checked genes

Lus10032768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.