Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26540 306 / 1e-103 ATUROS, ATDUF3, HEMD ARABIDOPSIS THALIANA UROPORPHYRINOGEN III SYNTHASE, DOMAIN OF UNKNOWN FUNCTION 724 3, uroporphyrinogen-III synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021755 [exp] 456 / 9e-163 AT2G26540 333 / 1e-114 ARABIDOPSIS THALIANA UROPORPHYRINOGEN III SYNTHASE, DOMAIN OF UNKNOWN FUNCTION 724 3, uroporphyrinogen-III synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G034700 [exp] 352 / 4e-122 AT2G26540 335 / 2e-115 ARABIDOPSIS THALIANA UROPORPHYRINOGEN III SYNTHASE, DOMAIN OF UNKNOWN FUNCTION 724 3, uroporphyrinogen-III synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02602 [flax] [poplar] HEM4 Uroporphyrinogen-III synthase HemD
Representative CDS sequence Show only first row Show all	>Lus10032769 pacid=23158972 polypeptide=Lus10032769 locus=Lus10032769.g ID=Lus10032769.BGIv1.0 annot-version=v1.0 ATGACGACTCTATTCCTCTCCTCCACTTTCCTCTTTCTCCATCCCTCTCCGCCTTCCGCTTCTTTTGGCCGCCGTCGGTGCTGCTTCGGAATCAGAGCTT CCTCCTCCTCTTCGCTTTCCGCATCCGCCTCGTCTGCGTCTACCTCCCAACCGAAAGTCGTCGTCACTAGGGAGCGTGGCAAGAACGGAAAGCTCATCAA TGCTCTGGCAAAACATGGGATCAGTTTTCTGGAACTCCCTCTAATTCAGCATACAGAGGGGCCTGATTCCGCCAGATTCTCCTCTGTGTTGAGAGATGTA ACATTTGATTGGATCGTCATAACATCCCCTGAAGCAGGTTCAGTCTTTCTGGAGGCATGGAAGGAAGCTGGAACCCCTAAGGTTAAGATAGCTGTTGTGG GAGCTGGCACCGCGAGCATTTTTGAAGGGGTCATCCAATCTTCCAACGGAGCACTTGATATTGCCTTCTTACCATCAAAAGCAACGGGCAAGGTTTTGGC ATCAGAGCTCCCGAACGGTGGGAATAGAAAATGCACAGTCTTGTATCCAGCGTCCGCTAAAGCAAGCAATGAAATCCAGGATGGCCTTTCTAACCGTGGA TTCGATGTCACGAGACTAAATACATATACAACGATTCCGGTGGATCATGTTGATCAGACAGTTCTCGAAGAGGCACAATCGGTTCCTGTTGTGGCAGTTG CTTCACCTTCTGCAATCCGTGCCTGGCTTAAACTTACTTCAGAATCAGGACATTGGAACAATTCCGTGGCCTGTATTGGTGAGACTACAGCTGCAGCTGC AAAAAGGTTGGGGTTTAAGAACGTGTACTATCCAACACAGCCTGGCCTAGAAGGGAAGGAGCTTGCAGGGCATGAGCGGTTTTCGAAGAACATAGCCTGT TTTCATATCCTCCTGTACCTATTCGGCCCTGCTTGGACCGGTTAG
AA sequence Show only first row Show all	>Lus10032769 pacid=23158972 polypeptide=Lus10032769 locus=Lus10032769.g ID=Lus10032769.BGIv1.0 annot-version=v1.0 MTTLFLSSTFLFLHPSPPSASFGRRRCCFGIRASSSSSLSASASSASTSQPKVVVTRERGKNGKLINALAKHGISFLELPLIQHTEGPDSARFSSVLRDV TFDWIVITSPEAGSVFLEAWKEAGTPKVKIAVVGAGTASIFEGVIQSSNGALDIAFLPSKATGKVLASELPNGGNRKCTVLYPASAKASNEIQDGLSNRG FDVTRLNTYTTIPVDHVDQTVLEEAQSVPVVAVASPSAIRAWLKLTSESGHWNNSVACIGETTAAAAKRLGFKNVYYPTQPGLEGKELAGHERFSKNIAC FHILLYLFGPAWTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26540		ATUROS, ATDUF3,...	ARABIDOPSIS THALIANA UROPORPHY...		Lus10032769 [exp]	0	1
AT3G17670			tetratricopeptide repeat (TPR)...		Lus10007446 [exp]	6.5	0.8317
AT4G10000			Thioredoxin family protein (.1...		Lus10009466 [exp]	9.8	0.8202
AT1G15330		AtPV42a	Cystathionine beta-synthase (C...		Lus10037342 [exp]	10.1	0.8330
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10041956 [exp]	10.3	0.8681
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001839 [exp]	11.8	0.8644
AT3G13690			Protein kinase protein with ad...		Lus10001996 [exp]	12.0	0.8299
AT1G60230			Radical SAM superfamily protei...		Lus10000081 [exp]	14.2	0.8481
					Lus10017544 [exp]	23.6	0.7672
AT5G51010			Rubredoxin-like superfamily pr...		Lus10016735 [exp]	23.8	0.8252
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10001823 [exp]	24.6	0.8443

Compare expression of checked genes

Lus10032769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.