Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029617 [exp] 244 / 1e-84 ND / Lus10032788 [exp] 242 / 9e-84 ND 36 / 0.007 Lus10042684 [exp] 199 / 9e-67 ND / Lus10029619 [exp] 198 / 2e-66 ND / Lus10003755 [exp] 127 / 2e-38 ND 37 / 0.002 Lus10003753 [exp] 126 / 5e-38 ND / Lus10003754 [exp] 120 / 8e-36 AT1G04520 39 / 3e-04 plasmodesmata-located protein 2 (.1) Lus10008314 [exp] 119 / 5e-35 ND / Lus10029618 [exp] 118 / 1e-34 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10032770 pacid=23158999 polypeptide=Lus10032770 locus=Lus10032770.g ID=Lus10032770.BGIv1.0 annot-version=v1.0 ATGGTTTATGTGTCGAAATTGGCTGCAGCGATCACATTTCTGATCCTGGCTATTTTGAGCGTGGTCGTTGTCGAGGGTGCAGACAAGAGCGTCATCAGCG GACCATACTGCATCAAGAAATCCTTGGACAGGGATTACAACAGGAATGCAAAACGTCTCATGGATATCCTTGTGGACGAAACCCGAGACAAGTATAGGAT GAGGGATCATGAGGAATACAGGTACTATCATAGCTACCCAAATAAGGACTTGGGTTCCGTCCTTGGTGGTGGGTATTGCGATGGACACCTCTCGAAATGG GGATGTGGCAGTTGCCTTGACTCTGCGAGGGGAAAAATCAAATTCCGTTGCGATCATACATTTGAGGCTAGTATTCAACTTACAGATTGTTCCCTTTGGT TCAGGAAGATCGTTAATCACCAAAACGAAACTGAGTACTAG
AA sequence Show only first row Show all	>Lus10032770 pacid=23158999 polypeptide=Lus10032770 locus=Lus10032770.g ID=Lus10032770.BGIv1.0 annot-version=v1.0 MVYVSKLAAAITFLILAILSVVVVEGADKSVISGPYCIKKSLDRDYNRNAKRLMDILVDETRDKYRMRDHEEYRYYHSYPNKDLGSVLGGGYCDGHLSKW GCGSCLDSARGKIKFRCDHTFEASIQLTDCSLWFRKIVNHQNETEY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032770 [exp]	0	1
					Lus10037041 [exp]	12.1	0.9319
AT5G16023		RTFL18, DVL1	DEVIL 1, ROTUNDIFOLIA like 18 ...		Lus10003079 [exp]	12.5	0.9600
AT1G65090			unknown protein		Lus10020377 [exp]	18.8	0.9529
AT1G05510			Protein of unknown function (D...		Lus10021483 [exp]	22.1	0.8693
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Lus10027862 [exp]	24.0	0.9514
AT2G42760			unknown protein		Lus10015227 [exp]	24.3	0.8376
					Lus10019223 [exp]	27.5	0.9496
AT5G16023		RTFL18, DVL1	DEVIL 1, ROTUNDIFOLIA like 18 ...		Lus10034071 [exp]	30.8	0.9480
AT1G50310		ATSTP9	sugar transporter 9 (.1)		Lus10013441 [exp]	34.0	0.9478
					Lus10010593 [exp]	37.2	0.9478

Compare expression of checked genes

Lus10032770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.