Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28850 751 / 0 Calcium-binding EF-hand family protein (.1.2) AT5G28900 750 / 0 Calcium-binding EF-hand family protein (.1) AT5G44090 746 / 0 Calcium-binding EF-hand family protein (.1) AT1G54450 743 / 0 Calcium-binding EF-hand family protein (.1) AT1G03960 692 / 0 Calcium-binding EF hand family protein (.1.2) AT5G18580 86 / 9e-18 FASS2, TON2, GDO, FS1, EMB40, FASS GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029614 [exp] 1050 / 0 AT5G28850 792 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10027963 [exp] 926 / 0 AT5G28850 771 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10021174 [exp] 923 / 0 AT5G28850 804 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10011811 [exp] 921 / 0 AT5G28850 797 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10008193 [exp] 914 / 0 AT5G28850 768 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10003628 [exp] 727 / 0 AT5G44090 775 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10008247 [exp] 713 / 0 AT5G44090 774 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10024917 [exp] 683 / 0 AT5G44090 751 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10022907 [exp] 680 / 0 AT5G44090 737 / 0.0 Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047300 [exp] 826 / 0 AT5G28850 887 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.019G019500 [exp] 822 / 0 AT5G28850 885 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.002G035800 [exp] 773 / 0 AT5G44090 814 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.005G227100 [exp] 741 / 0 AT5G44090 772 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.010G022300 [exp] 88 / 3e-18 AT5G18580 835 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Potri.008G215300 [exp] 82 / 2e-16 AT5G18580 830 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032772 pacid=23159043 polypeptide=Lus10032772 locus=Lus10032772.g ID=Lus10032772.BGIv1.0 annot-version=v1.0 ATGGACGGAGCGGTATCAATCAGTGACGTGTCTGCTTTCCACCCGGACTTCCTTCAGATCCCGGAATTCTCACCATTGGCCTTGAAGGCCAATCCTATCC TCGCCGAGCAACTCTTCTTCCAGTGGCTTTCGCTTCCCGATTCTTCTCGATTGGTCAAATCTTCGCTTTCCGCGGCTAAGGCTGGGGAACCGTTGAATGC TGCCGGAAATTCCAGCAGCCCGAATGCTGGTTCTGGTAGTGCTATACCGTCTATGTTCCCTTCTGGATGCACTCCACCACTTTCGCCACGTAGCGTCTCA GGTTCTCCTCGTACTGTGAAGCACAGGCTTGGCCCTTCCTCTTTGGGTTCTCCACTGAAAGTAATCAGTGAGCCAGTGCGGGAAGTCATACCTCAGTTTT ACTTTAAGAATGGACGGCTGCCTCCAGAGGAGACTAGACAGCAATGCTTAGTTCGAATCGATGAACAATTTCATAGTCATGAGAATGGGTTGCAACAAAA TGAATTTCAGTCCGTTACAAAGGATATCTGCAAGCTTCCGTCTTTTTTCTCCAGTTTATTGTTCAGAAGAATTGACGATAATAGTGTTGGCATGGTGACA AGGGATCAGTTTGTTGAGTATTGGGTTAACGGAAATTTCTTAACGATGGATTTAGCTACTCAGATATACACTGTTCTCAAGCAACCAGATAGCGAATACC TCACTCAGGCCTGTTGTGATGCCTTGGAATTTTTTATCCAATTTTTCCATTCCTTCGACCATCAGCTTGAGGATTTCAGACCCGTATTACGGGAAATTTT GGCAACTCATCCAGGGTTAGAATTTTTGCAGAGCACTCCAGAGTTTCAAGAGAGATATGCTGAAACGGTGATATATAGAATATTTCACTATGTAAATAGA TCAGGAACTGGTCATCTCACCCTCAAGGAGCTAAAGCGTTCAAACTTGATTGCTGCAATGCATCAAGTGGATGAAGAAGAAGATATTAATAAAGTTTTAA GGTACTTCTCCTATGAGCACTTCTATGTCATATACTGCAAATTCTGGGAGCTGGACACAGACCACGATTTCTTCATTGACAAAGAGAACCTTATTCGATA TGGCAACCATGCTCTTACGTATAGGATTGTCGATAGAGTTTTCTCTCAGGTTGCAAGGAAATTTAGAAGCAAGGTTGAAGGCAAGATGGGTTATGAAGAT TTTGTTTACTTCATACTCTCCGAGGAGGACAAATCTTCTGAACCTGGCATAGAGTTCTGGTTCAATTGCATTGATCTGGATGGAAATGGTTGCCTTACTT CCAACGAAATGCAATTCTTTTATGAAGAACAACTGCATCGGATGGAGTGCATGGCACAAGAACCAGTCACGTTTGAAGATATATTGTGTCAAATCATTGA TATGATTGGTCCAGAGACTGAAGGTCTCGTCACACTGCGTGACATGAAACGTACCAAACTTGCTGCACATGTCTTCAACATTCTTTTCAATCTGAATAAG TTCATTGCCTTCGAAAGTCGGGATCCTTTCCTAATTCGTCAGGAACGAGAGAACCCAACGTTGACAGAGTGGGACCGTTTTGCACATAGAGAGTATATAA GGCTTTCGATGGAAGACGATGCAGAAGACGTGTCGAATGGGAGTGGAGATGTCTGGGATGAATCTCTTGAGGCTCCCTTCTGA
AA sequence Show only first row Show all	>Lus10032772 pacid=23159043 polypeptide=Lus10032772 locus=Lus10032772.g ID=Lus10032772.BGIv1.0 annot-version=v1.0 MDGAVSISDVSAFHPDFLQIPEFSPLALKANPILAEQLFFQWLSLPDSSRLVKSSLSAAKAGEPLNAAGNSSSPNAGSGSAIPSMFPSGCTPPLSPRSVS GSPRTVKHRLGPSSLGSPLKVISEPVREVIPQFYFKNGRLPPEETRQQCLVRIDEQFHSHENGLQQNEFQSVTKDICKLPSFFSSLLFRRIDDNSVGMVT RDQFVEYWVNGNFLTMDLATQIYTVLKQPDSEYLTQACCDALEFFIQFFHSFDHQLEDFRPVLREILATHPGLEFLQSTPEFQERYAETVIYRIFHYVNR SGTGHLTLKELKRSNLIAAMHQVDEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFFIDKENLIRYGNHALTYRIVDRVFSQVARKFRSKVEGKMGYED FVYFILSEEDKSSEPGIEFWFNCIDLDGNGCLTSNEMQFFYEEQLHRMECMAQEPVTFEDILCQIIDMIGPETEGLVTLRDMKRTKLAAHVFNILFNLNK FIAFESRDPFLIRQERENPTLTEWDRFAHREYIRLSMEDDAEDVSNGSGDVWDESLEAPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	0	1
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10038564 [exp]	1.7	0.9294
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10011157 [exp]	3.0	0.9021
AT3G44330			unknown protein		Lus10013307 [exp]	3.9	0.9101
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10029643 [exp]	4.5	0.8952
AT3G58640			Mitogen activated protein kina...		Lus10017649 [exp]	4.9	0.9027
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10041971 [exp]	7.7	0.9281
AT3G48820			Glycosyltransferase family 29 ...		Lus10032547 [exp]	8.2	0.8491
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030899 [exp]	8.9	0.9022
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10034836 [exp]	10.2	0.9190
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10043062 [exp]	10.2	0.8538

Compare expression of checked genes

Lus10032772 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.