Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33840 583 / 0 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1) AT1G28350 534 / 0 Nucleotidylyl transferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029613 [exp] 719 / 0 AT2G33840 599 / 0.0 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1) Lus10009938 [exp] 312 / 4e-106 AT1G28350 290 / 5e-98 Nucleotidylyl transferase superfamily protein (.1) Lus10030144 [exp] 57 / 9e-10 AT2G33840 57 / 3e-10 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G248900 [exp] 609 / 0 AT2G33840 602 / 0.0 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1) Potri.008G010201 [exp] 476 / 2e-169 AT2G33840 462 / 2e-164 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00579 [flax] [poplar] tRNA-synt_1b tRNA synthetases class I (W and Y)
Representative CDS sequence Show only first row Show all	>Lus10032773 pacid=23159044 polypeptide=Lus10032773 locus=Lus10032773.g ID=Lus10032773.BGIv1.0 annot-version=v1.0 ATGTCTACGTCCGAGCAGAACCCTCTGCCTCCGTCGGAGGAGATGAATTCACTCTCCGTCGGCTCCTCCTCTCAATCTATTACTTCTACATCACAGGAAA TGAGTCCAGATGAGAAGTTTCGGATAGTCAGAAGCGTCGGAGAAGAGTGTATTCAAGAGGATGAGCTGCTCAATCTTCTCACCAAAAAACCCCAGCCTAT TTGCTATGACGGATTCGAGCCTTCTGGCCGAATGCACATCGCTCAGGGAGTGATGAAGACGATTAATGTGAACAAGCTGACATCTGCTGGCTGCAAAGTC AAGATCTGGATTGCTGACTGGTTTGCCCAGCTGAACAACAAAATGGGCGGTGATTTGAAGAAAATCCGAGTGGTTGGGGAGTACTTGATTGAGATATGGA AGGCTGTTGGGATGGATCTTGAAGGTGGGAAAGTGGAGTTTTTATGGTCTTCTGATGAAATTAACTCTCGTGCTGCTGAGTACTGGCCAATTGTAATGGA CATTGCTCGCAGGAACACACTTGCTAGAATAACAAGGTGTGGTCAAATTATGGGTCGAACCGAGAAGGATGAGTTGACGGCTGCACAGATTCTCTACCCG TGTATGCAATGTGCCGACATATTTTTCCTCAAGGCTGATATTTGTCAACTTGGAATGGACCAACGCAAAGTGAATGTTCTTGCAAGAGAATACTGTGACG ATATCAAGAGGAAAAACAAGCCTATCATCTTATCTCACCACATGTTACCCGGTTTACAGGAAGGACAAGACAAGATGTCGAAAAGCGATCCCACTTCCTC TGTTTTCATGGAGGATGAAGAGGCAGAAGTGAATGTGAAGATAAAAAAAGCTTTCTGTCCCCCCAAGGTTGTTCAGGGGAATCCTTGCCTGGAATACATC AAATACATTGTTCTACCTTGGTTTAATGAGTTCAAGGTGGAACGTAATCACCAAAATGGTGGAGATAAGACCTACATAGACTTTGAAGAACTTGTTGCTG ATTACGTAAGTGGGGAACTGCATCCTGGTGATCTAAAACCCTCTTTGTCAAAAGCATTGAACAAGATCCTGCAGCCTGTTCGTGATCATTTTGCCAAGGA TGCAAGAGCCAAGGACCTCTTAAAACGCGTCAAGGGTAGAGGCAAGCTTCTCTTGGACTTCCTTCCTATGATGCTGGCGTTGGAAATCTAG
AA sequence Show only first row Show all	>Lus10032773 pacid=23159044 polypeptide=Lus10032773 locus=Lus10032773.g ID=Lus10032773.BGIv1.0 annot-version=v1.0 MSTSEQNPLPPSEEMNSLSVGSSSQSITSTSQEMSPDEKFRIVRSVGEECIQEDELLNLLTKKPQPICYDGFEPSGRMHIAQGVMKTINVNKLTSAGCKV KIWIADWFAQLNNKMGGDLKKIRVVGEYLIEIWKAVGMDLEGGKVEFLWSSDEINSRAAEYWPIVMDIARRNTLARITRCGQIMGRTEKDELTAAQILYP CMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQEGQDKMSKSDPTSSVFMEDEEAEVNVKIKKAFCPPKVVQGNPCLEYI KYIVLPWFNEFKVERNHQNGGDKTYIDFEELVADYVSGELHPGDLKPSLSKALNKILQPVRDHFAKDARAKDLLKRVKGRGKLLLDFLPMMLALEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33840			Tyrosyl-tRNA synthetase, class...		Lus10032773 [exp]	0	1
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	3.2	0.9598
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	3.3	0.9642
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10013871 [exp]	5.5	0.9529
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Lus10033796 [exp]	8.8	0.9405
AT3G09720			P-loop containing nucleoside t...		Lus10013644 [exp]	9.2	0.9471
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	10.0	0.9486
AT1G69070			unknown protein		Lus10036815 [exp]	10.7	0.9378
AT1G04170		EIF2 GAMMA, EIF...	eukaryotic translation initiat...		Lus10005680 [exp]	12.0	0.9353
AT1G77030			hydrolases, acting on acid anh...		Lus10018941 [exp]	12.2	0.9390
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10014393 [exp]	12.6	0.9326

Compare expression of checked genes

Lus10032773 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.