Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04470 636 / 0 Ankyrin repeat family protein (.1) AT3G24210 470 / 1e-159 Ankyrin repeat family protein (.1) AT1G04780 385 / 7e-126 Ankyrin repeat family protein (.1) AT1G62050 292 / 1e-90 Ankyrin repeat family protein (.1) AT1G11740 270 / 8e-82 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008195 [exp] 721 / 0 AT3G04470 878 / 0.0 Ankyrin repeat family protein (.1) Lus10029612 [exp] 511 / 1e-173 AT3G04470 857 / 0.0 Ankyrin repeat family protein (.1) Lus10027961 [exp] 415 / 2e-143 AT3G04470 409 / 3e-141 Ankyrin repeat family protein (.1) Lus10011743 [exp] 385 / 7e-126 AT1G04780 852 / 0.0 Ankyrin repeat family protein (.1) Lus10000752 [exp] 380 / 1e-118 AT1G04780 863 / 0.0 Ankyrin repeat family protein (.1) Lus10027960 [exp] 321 / 4e-104 AT3G04470 412 / 3e-139 Ankyrin repeat family protein (.1) Lus10002942 [exp] 265 / 7e-81 AT1G62050 707 / 0.0 Ankyrin repeat family protein (.1) Lus10003524 [exp] 149 / 5e-39 AT1G62050 531 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019700 [exp] 729 / 0 AT3G04470 883 / 0.0 Ankyrin repeat family protein (.1) Potri.013G047500 [exp] 490 / 1e-166 AT3G04470 881 / 0.0 Ankyrin repeat family protein (.1) Potri.003G177000 [exp] 483 / 5e-164 AT1G04780 862 / 0.0 Ankyrin repeat family protein (.1) Potri.001G051400 [exp] 384 / 2e-125 AT1G04780 907 / 0.0 Ankyrin repeat family protein (.1) Potri.004G013500 [exp] 355 / 4e-115 AT1G62050 558 / 0.0 Ankyrin repeat family protein (.1) Potri.011G004500 [exp] 272 / 2e-83 AT1G62050 588 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11904 [flax] [poplar] GPCR_chapero_1 GPCR-chaperone
Representative CDS sequence Show only first row Show all	>Lus10032775 pacid=23158970 polypeptide=Lus10032775 locus=Lus10032775.g ID=Lus10032775.BGIv1.0 annot-version=v1.0 ATGGAAGACGTTTCCAAGTATTCTCACAGTCCTGCACATTTGGCAGTCGCACGACGCGATTATGCTGGCCTGAGACGCATTATTTCGAACCTGCCGCGCC TTGCCAAGGCTGGTGAGGTTACTACCGAAGAACAGTCTGTTGCATCTGAGCAGGAAGCTGATGCATTCTCCGCCATCATTGATCGCCGGGATGTTCCTGG TCGGGAGACGCCTCTGCATCTTGCTGTTAAATTGAGGGACCAAACGTCGGCAGAGATCTTAATGGCTGCTGGTGCGGACTGGAGCCTGCAAAATGAGAAT GGGTGGAGTGCGCTTCAGGAAGCAGTTTGCACAAGGGAGGAGGCGATTGCTTTGATAATTGCTTGTCACTATCAGCCACTGGCCTGGGCGAAATGGTGCA GACGACTTCCTCGTATTGTCGCTTCAGCAGGTCGTATTCGTGATTTTTACATGGAGATTACATTTCATTTCGAGAGTTCTGTCATCCCATTCATTGGCCG TATCGCCCCCTCGGATACTTATCGCATCTGGAAACGCGGTGCTAATCTTCGGGCTGACATGACACTTGCTGGGTTTGATGGGTTCCGAATTCAAAGATCA GATCAGACTTTTCTTTTCTTGGGAGAGGGGTACTCTTCAGAGGATGGTAGCACATCCTTACAACCAGGTTCTTTGCTTGTTCTTGCACACAAGGAAAAAG AGGTTACTAATGCTTTGGAGGGAGCAGGTGCACAACCCACTGAAGCAGAAGTTGCCCATGAAGTTGCTCTCATGTCTCAAACTAACATGTATACTCACGA TGATTTTGACGATGTGTTGACACCTGAAGAGAAAAAGCAGTTAGACTCTGCACTTCGTATGGGGAATTCAGATGGTGTTGGGGAGGATGAAGAACCGGCT GTGCTTGACTACCAAGAAAATGGTTCAGGTGGTGCATACGAAAATGGTGAATCGCATGGTACCACTAAAGAGAAGAAGGGGTGGTTTGGTTGGAAACATA AAGGTGCAAAGCACCACAATGATGACTCTGAAGATCCGAAAACATCTAAGAAGGTTGTGAAATTTACTCCAGAAGGTGACAATCTGAAATCTGTTGATCA TCAGAAATCATCATCTAGTTGGGAAGATCCAGCAGATGGAAAGAAGGGAAAGGATAAAAGTGGGAAGAAGAAAAAGAAGAAAGGGCCCAGCAGTGAGAGT AAGAATGAAAGCGAGTATAAAAAGGGTTTGCGTCCTGTATTGTGGTTGACACCTGATTTTCCATTGAAAATAGAAGAGCTTCTGCCTTTGCTTGACATAT TGGCTAACAAGGTTAAGGCTATTAGGAGACTCAGGGAGCTTTTGACTACTAAACTACCTTCTGGAACATTTCCTGTCAAGGATAGTGAACTTAACCTGCA GGTTGCCATTCCTATTGTTCCAACTGTAAGGGTGATTGTTACATTCACGAAATTTGAGGAGCTTATGCCAGTAGAGGAGTTCTCAACACCTCTTTCCAGC CCAACGCATTTCCATGATGCCAAATCCAGAGACTTCGACTCGATCTCGTCAACTTCTTGGATATCATGGATGAAAGGGGGTCGAGGCGGCCAGACAAGTG ATAGTGATAGCCACTGGCACAAAGACGAGAGTGACCCGTTCCATATACCATCAGATTATAAGTGGGTTGATGCCAATGAAAAGAAGCAACGGGTGAAAGC TAGGAAAGCCAAAGCCAAGAAACATAGGAAACCACAGCAAGCAGCCAGAAGCGGAGGTGTTGGAGGAGATAGCGCGGGTTATCGTCGAATCGAAACCGCT GAAGATTGA
AA sequence Show only first row Show all	>Lus10032775 pacid=23158970 polypeptide=Lus10032775 locus=Lus10032775.g ID=Lus10032775.BGIv1.0 annot-version=v1.0 MEDVSKYSHSPAHLAVARRDYAGLRRIISNLPRLAKAGEVTTEEQSVASEQEADAFSAIIDRRDVPGRETPLHLAVKLRDQTSAEILMAAGADWSLQNEN GWSALQEAVCTREEAIALIIACHYQPLAWAKWCRRLPRIVASAGRIRDFYMEITFHFESSVIPFIGRIAPSDTYRIWKRGANLRADMTLAGFDGFRIQRS DQTFLFLGEGYSSEDGSTSLQPGSLLVLAHKEKEVTNALEGAGAQPTEAEVAHEVALMSQTNMYTHDDFDDVLTPEEKKQLDSALRMGNSDGVGEDEEPA VLDYQENGSGGAYENGESHGTTKEKKGWFGWKHKGAKHHNDDSEDPKTSKKVVKFTPEGDNLKSVDHQKSSSSWEDPADGKKGKDKSGKKKKKKGPSSES KNESEYKKGLRPVLWLTPDFPLKIEELLPLLDILANKVKAIRRLRELLTTKLPSGTFPVKDSELNLQVAIPIVPTVRVIVTFTKFEELMPVEEFSTPLSS PTHFHDAKSRDFDSISSTSWISWMKGGRGGQTSDSDSHWHKDESDPFHIPSDYKWVDANEKKQRVKARKAKAKKHRKPQQAARSGGVGGDSAGYRRIETA ED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04470			Ankyrin repeat family protein ...		Lus10032775 [exp]	0	1
AT2G40070			unknown protein		Lus10037838 [exp]	4.4	0.8197
AT2G45590			Protein kinase superfamily pro...		Lus10036533 [exp]	8.5	0.7868
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10011847 [exp]	8.7	0.7744
AT4G11950			Protein of unknown function (D...		Lus10006712 [exp]	8.9	0.8057
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008929 [exp]	9.4	0.7891
AT5G01090			Concanavalin A-like lectin fam...		Lus10027751 [exp]	10.1	0.7450
AT4G09160			SEC14 cytosolic factor family ...		Lus10009458 [exp]	17.6	0.7996
AT5G60800			Heavy metal transport/detoxifi...		Lus10016133 [exp]	19.0	0.7641
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10014069 [exp]	21.1	0.7976
AT1G70330		"ENT1,AT", ENT1...	equilibrative nucleotide trans...		Lus10013002 [exp]	22.7	0.7941

Compare expression of checked genes

Lus10032775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.