Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44040 54 / 6e-08 unknown protein AT1G04030 50 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029611 [exp] 312 / 6e-106 AT1G04030 61 / 3e-10 unknown protein Lus10003613 [exp] 47 / 9e-06 AT1G04030 211 / 1e-63 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047700 [exp] 82 / 2e-17 AT1G04030 147 / 1e-39 unknown protein Potri.002G258501 [exp] 48 / 5e-06 AT1G04030 172 / 1e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032776 pacid=23159002 polypeptide=Lus10032776 locus=Lus10032776.g ID=Lus10032776.BGIv1.0 annot-version=v1.0 ATGGCCATGGAGGAGTTTTGGAACCCATCTCTGAAGAACCCACCAACCATGTTACCTATGGAGAAGATGAAGGTTGAGGAGAAGGAGGAGCAACTCAGCT GCGATTTGGTAAAGAAAGTGGCTTTTGAAGTGGAAACCCACCAAAAGGAGCCGACTTTACCTGATGAACAAGTTGGCAATGTTGGGGAAACAGAAGAGCG GCCCAACGGAAACATAGATAAAGAGGTTGAAGATGGTGGACCGGCAATCACGGATGCTTCTGATGATGATAGTTATGAATACAGCGAAGAAGGTTACGGG ACAGTCATGGAAGAGTCTTCTGAGTCGTTGTTTTCAATCTCCATCAGTTCGAGAAAATACCAAGCTGATATGGGTGAAAAGGAAGTTACCAGCCCACTCC CAAAATGTGTTCCAGTGTTGAATCCATTGGAAGAAACCCAGTTCAAAGAAGCAGCGAAAGAAACAACTCTCAAAACGACAGCGTTGCAGCAGCAGCATCT GGACAAGGAGAATGTCAAAGTAGACATAAATGTCGTCACTTGCCCAAGCCCTGAGTTTAGCTTCAAGCCATTGATTGACAATTCGGGAAAGGGAGCTAAT GGTCTAAAGAAGGTTGCAGAGCCAGACGTTGCAGTTGATGCTAGCCTGTCGAATTGGTTGGTTGGAGACCAAAAAACTCAGCAAGAGGAGAACAGTGTTG AATCAGTTGGCTATCCCACAGAGAAACGGCAAGATCGGCCAGTTTTAGGAGCATTGACGATCGGTGTACTTAAACAAGCTCCTGCAAATAGAACCTCACC TTCAAAGTCAAGAAGCCAGAGAATAATCAGTGGAACGGCAATCAGGGGAACAGTTGGAAGCTACTGGATGCAGACGGACCGCAATGTGGATTAA
AA sequence Show only first row Show all	>Lus10032776 pacid=23159002 polypeptide=Lus10032776 locus=Lus10032776.g ID=Lus10032776.BGIv1.0 annot-version=v1.0 MAMEEFWNPSLKNPPTMLPMEKMKVEEKEEQLSCDLVKKVAFEVETHQKEPTLPDEQVGNVGETEERPNGNIDKEVEDGGPAITDASDDDSYEYSEEGYG TVMEESSESLFSISISSRKYQADMGEKEVTSPLPKCVPVLNPLEETQFKEAAKETTLKTTALQQQHLDKENVKVDINVVTCPSPEFSFKPLIDNSGKGAN GLKKVAEPDVAVDASLSNWLVGDQKTQQEENSVESVGYPTEKRQDRPVLGALTIGVLKQAPANRTSPSKSRSQRIISGTAIRGTVGSYWMQTDRNVD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44040			unknown protein		Lus10032776 [exp]	0	1
AT1G65710			unknown protein		Lus10010952 [exp]	3.2	0.9633
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10010483 [exp]	4.9	0.9512
AT3G01015			TPX2 (targeting protein for Xk...		Lus10030836 [exp]	5.5	0.9463
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Lus10037155 [exp]	6.0	0.9521
AT4G14330			P-loop containing nucleoside t...		Lus10011804 [exp]	10.4	0.9471
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10040248 [exp]	11.2	0.9437
AT2G41710	AP2_ERF		Integrase-type DNA-binding sup...		Lus10040140 [exp]	12.7	0.9263
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	14.9	0.9440
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10030746 [exp]	17.9	0.9347
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10030714 [exp]	17.9	0.9362

Compare expression of checked genes

Lus10032776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.