Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04460 594 / 0 PEX12, ATPEX12, APM4 ABERRANT PEROXISOME MORPHOLOGY 4, peroxin-12 (.1) AT2G26350 42 / 0.0005 PEX10, ATPEX10 peroxin 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029609 [exp] 404 / 2e-142 AT3G04460 276 / 2e-92 ABERRANT PEROXISOME MORPHOLOGY 4, peroxin-12 (.1) Lus10029610 [exp] 295 / 2e-100 AT3G04460 248 / 9e-83 ABERRANT PEROXISOME MORPHOLOGY 4, peroxin-12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047800 [exp] 657 / 0 AT3G04460 624 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 4, peroxin-12 (.1) Potri.019G020000 [exp] 655 / 0 AT3G04460 621 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 4, peroxin-12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04757 [flax] [poplar] Pex2_Pex12 Pex2 / Pex12 amino terminal region
Representative CDS sequence Show only first row Show all	>Lus10032777 pacid=23158995 polypeptide=Lus10032777 locus=Lus10032777.g ID=Lus10032777.BGIv1.0 annot-version=v1.0 ATGTTGTTCCAGGTAGGAGGGCAAGGGGATCGACCCACTTTCTTCGAGATGGCAGCTGCTCAACAGCTTCCCTCCAGTCTCCGTGCTGCTCTCACCTATT CCATCGGCGTGTTGGCCCTGAGGAGTCCCTTCCTCCATAAGGTTTTAGACTATGAAGATGAGTTCTTTGCTGCTCTTATGCTGGTTCTCGAGACTCATAG CTTACGAACCACAGATGCTTCGTTTGCCGAATCACTCTATGGATTGCGGAGACGATCAGTACGCATTCAAATAAAGAACGATGATCTTAGGTTGAAGAAA GAGGATAAAACTCCCCGCTCCGGCCTCGAGAAGCGCCAACGGATCCTCTCAGTTGTATTTCTGGTTGTCCTGCCTTATTTCAAGTCAAAGTTGCAATCTG TATACAATAGAGAAAGAGAAGCCAGGCTTCAAGCAAGCTTGTGGGGGAATGAAGATGAAACATTTGAAGGCACTTCGTATTTTGATGGCACCGAAGCTTC TCCTGTTCCTAGAGGAACTTCTGATGCACAATTGACAGTTAGAGCGCGTTTAAGAAAGAGAATTCAGAAAGTTGTTTTTGCTTGCTATCCTTTTTTACAC GCCGGCATTGAAGGATTTTCATTCAGTTATCAGCTATTGTATCTCCTTGATGCTACTGGATTCTATTCCTTGGGGCTACATGCGCTCGGTATTCATGTTT GTCGAGCAACAGGGCAAGAACTGATGGACACATCTTCTAGAATTTCTAAGATACGAACTCGTGAGCGGGAGAGGCTCCGTGGCCCTCCATGGTTGAAGGC ACTACAAGGAGCAATACTGAGAGGTTCATATACAGTGCTTGACTATGCACAAACTGGTCTGATTGCTGCAGTGTTCTTCTTCAAAATGATGGAATGGTGG TATCAATCTGCTGAAGAGAGAATGTCAGCTCCAACTGTATACCCGCCCCCACCTCCACCTCCACCTCCAAAGGTCGCGAAAGAAGGGATTTCGCTACCAA AAGATAGAACGGTTTGCCCTTTGTGCTCTCAGAAGCGTGCAAACCCGTCAGTGGTCACTGTCTCAGGGTTCGTCTTCTGTTATGCATGTGTCTTCAAATA CGTATCGCAGTATAATCGTTGTCCTGTTACATTGATGCCATCAAACGTCGACCAGATACGAAGGCTCTTCCACGATATGTAG
AA sequence Show only first row Show all	>Lus10032777 pacid=23158995 polypeptide=Lus10032777 locus=Lus10032777.g ID=Lus10032777.BGIv1.0 annot-version=v1.0 MLFQVGGQGDRPTFFEMAAAQQLPSSLRAALTYSIGVLALRSPFLHKVLDYEDEFFAALMLVLETHSLRTTDASFAESLYGLRRRSVRIQIKNDDLRLKK EDKTPRSGLEKRQRILSVVFLVVLPYFKSKLQSVYNREREARLQASLWGNEDETFEGTSYFDGTEASPVPRGTSDAQLTVRARLRKRIQKVVFACYPFLH AGIEGFSFSYQLLYLLDATGFYSLGLHALGIHVCRATGQELMDTSSRISKIRTRERERLRGPPWLKALQGAILRGSYTVLDYAQTGLIAAVFFFKMMEWW YQSAEERMSAPTVYPPPPPPPPPKVAKEGISLPKDRTVCPLCSQKRANPSVVTVSGFVFCYACVFKYVSQYNRCPVTLMPSNVDQIRRLFHDM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04460		PEX12, ATPEX12,...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10032777 [exp]	0	1
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	2.8	0.8663
AT1G33360			ATP-dependent Clp protease (.1...		Lus10000933 [exp]	9.2	0.8099
AT4G27020			unknown protein		Lus10032644 [exp]	11.0	0.7896
AT3G48195			Phox (PX) domain-containing pr...		Lus10001232 [exp]	11.2	0.8302
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043014 [exp]	11.3	0.8219
AT3G51130			unknown protein		Lus10014270 [exp]	12.2	0.8268
AT3G06810		IBR3	IBA-RESPONSE 3, acyl-CoA dehyd...		Lus10033467 [exp]	15.9	0.7851
AT5G01990			Auxin efflux carrier family pr...		Lus10035610 [exp]	17.5	0.7828
AT4G08790			Nitrilase/cyanide hydratase an...		Lus10001975 [exp]	22.8	0.7722
AT1G78420			RING/U-box superfamily protein...		Lus10013709 [exp]	25.5	0.7684

Compare expression of checked genes

Lus10032777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.