Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032779 pacid=23158978 polypeptide=Lus10032779 locus=Lus10032779.g ID=Lus10032779.BGIv1.0 annot-version=v1.0 ATGGTGAAGTGGATGATCCGCCCTCCTCGTCAGGATCCACGGGATTTTCGGGGAGGTGTATCTGAAGAAGTTAATGGAACAAGAACCAAAGCTAAGGATG TTCAGGCTAGAGTTGAACTTATGGTATGGTTCAGTCCCCGCACATCGACCCAAGGTCTGGTCGTAGAAGAGATTGGCGGTGAAGGAGAAAAGGTTTTCTA CGGAGATCCATTGGCATCTTCAAGTTCTGCGGGAACAAGGTCAACGACACCAGGGGTTATCAACCTGGAATGGAAGAAAGATGATGTCCAATGTCAACCC TTGGCTCCTGATACTACAGAGGATGCTGATACTACAGAGGTTGATGGTACTACTGCCGAGGAAGCTTCTCAGGCACACCTTGCAATTGACATGGCTTAG
AA sequence Show only first row Show all	>Lus10032779 pacid=23158978 polypeptide=Lus10032779 locus=Lus10032779.g ID=Lus10032779.BGIv1.0 annot-version=v1.0 MVKWMIRPPRQDPRDFRGGVSEEVNGTRTKAKDVQARVELMVWFSPRTSTQGLVVEEIGGEGEKVFYGDPLASSSSAGTRSTTPGVINLEWKKDDVQCQP LAPDTTEDADTTEVDGTTAEEASQAHLAIDMA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032779 [exp]	0	1
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10035218 [exp]	1.4	0.7485
AT1G73890			Bifunctional inhibitor/lipid-t...		Lus10032488 [exp]	1.7	0.7916
AT2G15220			Plant basic secretory protein ...		Lus10019802 [exp]	14.0	0.6962
AT5G01750			Protein of unknown function (D...		Lus10014154 [exp]	15.9	0.6684
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10030078 [exp]	24.1	0.7083
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10017982 [exp]	33.8	0.6126
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10035881 [exp]	45.7	0.6887
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024256 [exp]	61.9	0.6013
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10036959 [exp]	82.4	0.6037
AT4G35160			O-methyltransferase family pro...		Lus10032304 [exp]	91.9	0.5658

Compare expression of checked genes

Lus10032779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.