Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33320 221 / 3e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G04540 219 / 9e-66 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G13350 209 / 1e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G04360 187 / 1e-55 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G01200 128 / 1e-34 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G16510 70 / 6e-13 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G23950 66 / 2e-12 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G15755 53 / 9e-08 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G40815 52 / 5e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G45760 49 / 1e-06 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003570 [exp] 649 / 0 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10014466 [exp] 195 / 1e-58 AT1G04540 245 / 7e-76 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008731 [exp] 116 / 9e-30 AT4G01200 222 / 3e-72 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10002155 [exp] 115 / 2e-29 AT4G01200 224 / 7e-73 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10024505 [exp] 58 / 1e-09 AT2G45760 58 / 3e-10 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10006523 [exp] 59 / 2e-09 AT3G16510 147 / 1e-41 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10004500 [exp] 57 / 5e-09 AT1G09070 179 / 2e-55 soybean gene regulated by cold-2 (.1) Lus10029901 [exp] 57 / 5e-09 AT1G09070 172 / 6e-52 soybean gene regulated by cold-2 (.1) Lus10040692 [exp] 57 / 7e-09 AT1G07310 189 / 2e-57 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021300 [exp] 444 / 3e-156 AT3G04360 213 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G048400 [exp] 405 / 2e-140 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G065300 [exp] 231 / 1e-71 AT2G13350 261 / 6e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G172300 [exp] 229 / 2e-70 AT2G33320 265 / 8e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G166400 [exp] 135 / 4e-37 AT4G01200 211 / 4e-68 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G024200 [exp] 82 / 2e-17 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G458101 [exp] 68 / 6e-14 AT2G13350 74 / 1e-16 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G064900 [exp] 69 / 1e-12 AT1G07310 150 / 1e-42 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.012G144600 [exp] 64 / 4e-11 AT5G23950 166 / 2e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G209800 [exp] 62 / 1e-10 AT3G16510 137 / 8e-38 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10032780 pacid=23159007 polypeptide=Lus10032780 locus=Lus10032780.g ID=Lus10032780.BGIv1.0 annot-version=v1.0 ATGACGTACAACACTCACCCCTTCCAGCTCCTGGAGATCAACGTCATCTCCTCTCAGGACCTCGCTCCCGTTTCCAAATCCATGAAAACCTACGCCGTCG TCTGGGTCCACCCGGAGCGGAAATTGAGCACCAAAGTCGACCAGGGCGGCAACACCAATCCTCAGTGGAATGAAAAATTCGTCTTCCGAGTCGACGATAC TTTTTTAAATTCCGAAAGCTCCTCCGTCATGATCGAGATCTACGCCGCTGCTTGGCTGCGTGATGTTCAGATCGGATCTGTGCGTGTGCTCATCAGCAAT CTATTCCCTTCCGGATCCAGCGGAAACAACAACCACGGCGCTGCAAAGATGCGATTCGTCGCGCTACAGATCCGTCGTCCCTCCGGCCGGCCTCAGGGGA TTTTGAACATGGGAGTGCAGTTGCTCGACAACACGATGAGATCCATGCCTCTGTACACGGAGCTCTCCGCTTCCGGAGTCGGATTTAACGACCTCCTCGA CGCTACCGCCGCTGCTGCGGGGAAGAATCTAGAACAGAAGACAGCCAAGCTCCGCCGTTCGAAGAGCGATCACACGGATCTGACCTCTATGAATAATGAG AAGGCTTCTTCTACTAGGAGATACGCTGGGAGTTCGATCGGAATCGGCGGTGGAGGTGGCGGAGGATCGCTCGTTAGCTCCTCTATAGTCCCCGCCAAGA AACAGAATGTCAGATCGAGGGAACACGAGGATGCTGGGGGTAACGGGAGCATGGTGAACGGTGGGTCCCAGTGCTCTGACGTGGGGCCCTCGGCTTCGGT AGTGGCGGCGGCGATCGCGAAGGGGCTGATTATGACGCCAGGAGGAGGGAACCACGGGGATGCTGGGAGCTCGGTGCTGGAGGATTGGACCGAGAACGAT AGCGTTGAAGGGCTGAGGACGAAACTAGAGAGGTGGAGGACCGAATTGCCGCCGATCTACGATACCGACGTGAAGAAGATGCAGTCCAGGAGCAGGAGGA AAGGGAACAACAACCACCAGCGGAGGAAATCGGAAGGGACGAGGCTGTTCTCCTGCTTCGGTAACGCTTGCGGTTGCGAGATCACTATCACTTGCGGCGG AGGAAAGAAGAAGGACGCCAACGGGAATAAGAACGGCGGCCGTCGAGCTAGCTCCGCCGACAGCGAGTCCTACTTCTAA
AA sequence Show only first row Show all	>Lus10032780 pacid=23159007 polypeptide=Lus10032780 locus=Lus10032780.g ID=Lus10032780.BGIv1.0 annot-version=v1.0 MTYNTHPFQLLEINVISSQDLAPVSKSMKTYAVVWVHPERKLSTKVDQGGNTNPQWNEKFVFRVDDTFLNSESSSVMIEIYAAAWLRDVQIGSVRVLISN LFPSGSSGNNNHGAAKMRFVALQIRRPSGRPQGILNMGVQLLDNTMRSMPLYTELSASGVGFNDLLDATAAAAGKNLEQKTAKLRRSKSDHTDLTSMNNE KASSTRRYAGSSIGIGGGGGGGSLVSSSIVPAKKQNVRSREHEDAGGNGSMVNGGSQCSDVGPSASVVAAAIAKGLIMTPGGGNHGDAGSSVLEDWTEND SVEGLRTKLERWRTELPPIYDTDVKKMQSRSRRKGNNNHQRRKSEGTRLFSCFGNACGCEITITCGGGKKKDANGNKNGGRRASSADSESYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33320			Calcium-dependent lipid-bindin...		Lus10032780 [exp]	0	1
AT4G21580			oxidoreductase, zinc-binding d...		Lus10011233 [exp]	10.2	0.8670
AT2G45590			Protein kinase superfamily pro...		Lus10031678 [exp]	19.4	0.8296
AT3G13840	GRAS		GRAS family transcription fact...		Lus10000532 [exp]	20.1	0.8514
AT3G19895			RING/U-box superfamily protein...		Lus10034201 [exp]	20.2	0.7983
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10009944 [exp]	37.9	0.8501
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10017129 [exp]	41.5	0.8381
AT5G18610			Protein kinase superfamily pro...		Lus10033966 [exp]	46.6	0.8313
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10028823 [exp]	46.9	0.8270
AT1G24560			unknown protein		Lus10013022 [exp]	50.0	0.8394
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10000472 [exp]	53.0	0.8226

Compare expression of checked genes

Lus10032780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.