Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14460 56 / 4e-09 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G14470 54 / 1e-08 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003571 [exp] 319 / 5e-104 AT3G14470 363 / 6e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10002609 [exp] 211 / 2e-63 AT3G14470 364 / 9e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10004127 [exp] 199 / 2e-59 AT3G14470 350 / 5e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 199 / 2e-59 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1) Lus10022900 [exp] 181 / 8e-53 AT3G14470 350 / 2e-104 NB-ARC domain-containing disease resistance protein (.1) Lus10011856 [exp] 150 / 1e-45 AT3G14460 76 / 5e-16 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10029705 [exp] 151 / 9e-45 AT3G14460 112 / 5e-27 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022792 [exp] 151 / 3e-42 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10020361 [exp] 100 / 1e-25 AT3G03470 67 / 2e-12 "cytochrome P450, family 87, subfamily A, polypeptide 9", cytochrome P450, family 87, subfamily A, polypeptide 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G025400 [exp] 98 / 7e-24 AT3G14470 558 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.008G212200 [exp] 89 / 1e-20 AT3G14470 392 / 8e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003200 [exp] 85 / 3e-19 AT3G14470 352 / 4e-103 NB-ARC domain-containing disease resistance protein (.1) Potri.001G261600 [exp] 85 / 4e-19 AT3G14470 628 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121876 [exp] 82 / 3e-18 AT3G14470 404 / 6e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.001G022800 [exp] 82 / 4e-18 AT3G14470 168 / 1e-43 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121851 [exp] 81 / 5e-18 AT3G14470 348 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 81 / 9e-18 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.014G012000 [exp] 80 / 2e-17 AT3G14470 367 / 7e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 79 / 3e-17 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032782 pacid=23159047 polypeptide=Lus10032782 locus=Lus10032782.g ID=Lus10032782.BGIv1.0 annot-version=v1.0 ATGAACCAACTCCAGGGACTTCTTTGTGTGTGTGGTCTAAGTAATGTGGCAGAGAGTTATGAGGCGGAACAAGCTGATTTTGCCCGAAAAATATCGCTGA CCAGTTTAGTTCTTGAATTTAAAGATTATAAAGGTAACATTGGCGATGATAAGGATGAAGTATTGTTGGAAGCGGTAAGACCATCCACCAACTTGGAAGA ACTGATTATAACTCGTTATATGGGTGCTTCGGTATCTCCGACCTGGATGGGGTTGCTCTCTACCTTAGCTCGCCTTTCATTTATGTATTGCTACAAGGTG AAGTATCTGCCTCCTTTAGGCCATCTGCGGTCTCTCGAAAAACTGTCATTCTTGGGAATGATCAAAGTAAAGAATATAGGTGTTGAGCTTCTTGGACATT ATATTGGAGCATTTCCAAGGTTGACGCTGCTGATATTTGAATGTATGTGGGAGTGGGAAGAGTGGGATGATACGATATTATCATCACCATCAGTGATGCC TCGGCTAAGTTACTTGAAATTGCGCTGCTGCAAGCAGCTAAAGAAGTTGCCGATGCAATTCTCGAGAAACCGACACTAG
AA sequence Show only first row Show all	>Lus10032782 pacid=23159047 polypeptide=Lus10032782 locus=Lus10032782.g ID=Lus10032782.BGIv1.0 annot-version=v1.0 MNQLQGLLCVCGLSNVAESYEAEQADFARKISLTSLVLEFKDYKGNIGDDKDEVLLEAVRPSTNLEELIITRYMGASVSPTWMGLLSTLARLSFMYCYKV KYLPPLGHLRSLEKLSFLGMIKVKNIGVELLGHYIGAFPRLTLLIFECMWEWEEWDDTILSSPSVMPRLSYLKLRCCKQLKKLPMQFSRNRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14460			LRR and NB-ARC domains-contain...		Lus10032782 [exp]	0	1
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10006673 [exp]	19.6	0.8203
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10028068 [exp]	26.7	0.8091
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Lus10042789 [exp]	29.0	0.8267
AT3G14470			NB-ARC domain-containing disea...		Lus10003571 [exp]	33.9	0.8149
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10000032 [exp]	57.7	0.7952
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10039899 [exp]	59.5	0.8093
					Lus10024940 [exp]	64.8	0.8086
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Lus10007017 [exp]	80.0	0.7970
					Lus10026494 [exp]	108.9	0.7919
					Lus10010415 [exp]	125.0	0.7365

Compare expression of checked genes

Lus10032782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.