Plant FIBer expression Database

Lus10032784 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006893
[exp]
52 / 2e-08 AT3G61220 313 / 4e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Lus10014690
[exp]
45 / 2e-06 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Lus10006894
[exp]
44 / 9e-06 AT3G61220 325 / 1e-111 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Lus10014689
[exp]
0 / 1 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10032784 pacid=23159036 polypeptide=Lus10032784 locus=Lus10032784.g ID=Lus10032784.BGIv1.0 annot-version=v1.0
ATGAAGAGAAAGCAACCGGGTCCAACTACCACCCATCGGTCATCCCAACGCCAAGTGTCGTCTGCTGCTGTTATCGAAGAGACTGAAGTGGAGAAATATG
AAGACGCGCACCAAACCGACAACTCTTCACCATCGGAGGAAGAAACCTTCAGTCGTTGGCGCCATCGTAAAGGGAAGTTGACCGCCCAAAAAAAGAAAGA
TAATAACCCATCGGAGGACATGCAAGCAGATGAAGATCAGTCTATATGTGATTACAGTCTGATTAAAAGGATGTCTCCAATGTGTGATCAAAGAAGAGTC
CAGAAGGACCCCCCCGTCCGGCAACAATGCCAACATCACCGAACCCTTGGCTCCTTCTTCAAGACTCTTCAGACTGTATTGTAA
AA sequence
>Lus10032784 pacid=23159036 polypeptide=Lus10032784 locus=Lus10032784.g ID=Lus10032784.BGIv1.0 annot-version=v1.0
MKRKQPGPTTTHRSSQRQVSSAAVIEETEVEKYEDAHQTDNSSPSEEETFSRWRHRKGKLTAQKKKDNNPSEDMQADEDQSICDYSLIKRMSPMCDQRRV
QKDPPVRQQCQHHRTLGSFFKTLQTVL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10032784
[exp]
0 1
AT2G06530 VPS2.1 SNF7 family protein (.1) Lus10021562
[exp]
6.2 0.6853
AT5G39670 Calcium-binding EF-hand family... Lus10042369
[exp]
14.7 0.7304
AT1G74910 ADP-glucose pyrophosphorylase ... Lus10042942
[exp]
20.2 0.6709
AT3G05320 O-fucosyltransferase family pr... Lus10040618
[exp]
29.2 0.6695
AT2G46580 Pyridoxamine 5'-phosphate oxid... Lus10030234
[exp]
32.4 0.6570
AT2G24765 ARF3, ARL1, ATA... ARF-LIKE 1, ADP-ribosylation f... Lus10020106
[exp]
34.5 0.6504
AT1G60750 NAD(P)-linked oxidoreductase s... Lus10041185
[exp]
40.0 0.6624
AT3G01390 AVMA10, VMA10 vacuolar membrane ATPase 10 (.... Lus10029418
[exp]
45.7 0.6395
AT1G74910 ADP-glucose pyrophosphorylase ... Lus10032440
[exp]
49.1 0.6539
AT1G53400 Ubiquitin domain-containing pr... Lus10029264
[exp]
60.7 0.6512

Lus10032784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.