Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08600 1199 / 0 ATRX, CHR20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) AT3G19210 244 / 1e-66 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT2G18760 194 / 9e-50 CHR8 chromatin remodeling 8 (.1) AT1G05490 190 / 2e-48 CHR31 chromatin remodeling 31 (.1) AT5G63950 180 / 1e-45 CHR24 chromatin remodeling 24 (.1) AT2G21450 174 / 3e-44 CHR34 chromatin remodeling 34 (.1) AT5G19310 175 / 4e-44 Homeotic gene regulator (.1) AT2G13370 168 / 1e-41 CHR5 chromatin remodeling 5 (.1) AT2G25170 167 / 2e-41 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT2G16390 166 / 2e-41 DMS1, CHR35, DRD1 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003572 [exp] 2630 / 0 AT1G08600 1560 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Lus10014047 [exp] 229 / 1e-61 AT3G19210 1256 / 0.0 homolog of RAD54 (.1.2) Lus10019866 [exp] 227 / 1e-60 AT3G19210 1257 / 0.0 homolog of RAD54 (.1.2) Lus10033669 [exp] 203 / 2e-53 AT1G03750 1148 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Lus10033909 [exp] 196 / 2e-50 AT2G18760 1569 / 0.0 chromatin remodeling 8 (.1) Lus10003543 [exp] 194 / 7e-50 AT2G18760 1543 / 0.0 chromatin remodeling 8 (.1) Lus10015690 [exp] 194 / 8e-50 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1) Lus10037696 [exp] 192 / 3e-49 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1) Lus10042070 [exp] 164 / 2e-40 AT2G16390 833 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048500 [exp] 1774 / 0 AT1G08600 1603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.019G021500 [exp] 1765 / 0 AT1G08600 1612 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.004G141500 [exp] 235 / 2e-63 AT3G19210 1259 / 0.0 homolog of RAD54 (.1.2) Potri.017G012400 [exp] 204 / 9e-54 AT1G03750 1162 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Potri.005G226500 [exp] 194 / 5e-50 AT2G18760 1362 / 0.0 chromatin remodeling 8 (.1) Potri.005G066600 [exp] 187 / 6e-48 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.007G102800 [exp] 186 / 1e-47 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.006G262200 [exp] 171 / 1e-42 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.014G050200 [exp] 170 / 3e-42 AT1G05490 592 / 0.0 chromatin remodeling 31 (.1) Potri.001G253400 [exp] 168 / 1e-41 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10032785 pacid=23159029 polypeptide=Lus10032785 locus=Lus10032785.g ID=Lus10032785.BGIv1.0 annot-version=v1.0 ATGGAAGAAAAGCACGAGGACTATGAAGAAGTTGAAGTCGCTTCCAATGGCTCTTCTATTGGTGATTCAGATGACGATGAACTGTCGACATCTGGACAGG ATGATGATACACATCTTGAGGCAAGCTGCTCTAGATACTTTTTAAGCAGTTCACCGGAACCTCTGACTGAGGAAGAAATCCAAGAGCTGATATCTGAGTT CTTGGAAGTTGAGAGTAAGGCTGCAGAGGCTCAAGAAGCACTTGAAAAGGAGTCTCTTACAAAAGTGGAGACTGAAGTAAGAGAGGAATTGGCACAAACT CTTCAGGGGGATGAGCTAGAGGCTACTGTGCAAGATGAGATTACTACTTTAAAGGAAGAATGGGAGGCTGTTCTTGATGAACTTGAAACCGAGAGTGCTC ATTTGTTGGAACAACTTGATGGGGCTGGTATTGAGCTACCAAGCATTTACAAGTTAATAGAAAGTCAAGCTCCTGATGTATGCTACACAGAAGCATGGAA GAAAAGAACTCATTGGGTTGGATCCCAGGTAACCACTGAAGTCAAGTCAACTGTAGCTGATGCTGAGAAGTTCCTTCAGGACGTGAGGCCTGTCAGAAGA CGTCATGGTAAACTCTTGGAGGAGGGCGCTAGTGGGTTTATTCAGAAAAAGGTGGGTAACGTTGATGGAAAAACGGACTCTATTGCTGAAAATAGAGATC AAGACTGGGATTCTCTCAACAAACTATTTTCTGGTGATATACGCGATGGTGTTTCGTCATTTGGCAGCGAGCATTGGGCTTCTGTTTATCTGGCCAACAC GCCTAAGGAAGCTTCAATGATGGGTCTTAAATTTCCTGGTGTTGATGAGGTTGAAGAGATAGACGACATTGATGATAATTCCAGTAATCCGTTTGTAGCA CTTGCCATAGAGCATGAAAATGAGTTGCCACTATCTGAAGAACAAATGAAGAATTATAAGAAGGTGAAAGAGGATGATGATGCAAAGATGGAAGTTCAGA AACTGCAACATCATTTGAAGAAGAGGAGACGTCGTAAGAAACAAAAGCAGAGTCGGGATACAATTATGGATGATTCACTGCCTACGGATGATTCTTTCGT CGTAAAATCTCAGGAACATGGAGAGGGTGTTTCAGGCAATCCCCTTGTTACTTCATGCGGAATTCTGGGGACAGAAACTCTTGAAGACGGGCATTTTGAC AGGGAGCAACCTACAACTGATGGAAAGCCAGATTCCTGTGTGTTAACCTTTAATGCCACTAGAATCATTGGTGCTAAGCGTCCATATGAGCATGACAATC TAAACGTTAGTGATAAGAAAATTCGGACTGTTGATGTTGGTAGTGATGATGTGAATAACATGAAGGATAATTTGGCTGGTGATGCCATTAAAGTAGAGCA TCAAGCAGTTGTACAAGAACTGGATCAGGAGTATCGTTGCACTGCTTGTGATAAGATCACTCCTGAAATACACTCGCATCCGCTTCTGAGAGTGATTGTT TGCAAGGAGTGCAAGTGCATGGTAGAAGAGAAATTGCTCTTGAAGGATCCAGAGTTTTATTGTGGATGGTGTGCACAAAGTGAGGACTTAGTGAGCTGCA ACTCCTGCATAAATTTATTCTGTAGAACTTGTATCACAAAAAATATTGGTCAAGAAGGCTGTCCAGACTCCCTAGCTTGTGGCTGGCAGTGTTGTTGTTG CCTTCCAAATTTGCTAGATAGACTAACTAGCGAATTGGAGAAAGCCGTGGAATCTGTGGATTCAATGGATGCAAGCTCTGATAGTGATTCAGAAAACTCT GGATCAAATATCAATGTTGCGATAAGTTCTAAGAGAAGGAGGAAAAAGAAGATTCGAAGGATCTTGGATGATGCAGAACTTGGAGAGGAGACAAAGAGGA AGATTGCAATTGAAAAGGAGCGCCAAGAACATTTGAAATCTCTAAAAGTGCAATTCTCTGGCAAGTCCGAGATGACTAGGCCCGCAACCTTGCACGGAAA TTTACCTGAAGGTGCTACTGCAGAAGTTCTTGGTGATCGCATAACCGGATATGTGGTAAATGTTGTTAGGGACAAAGGTGAAGAAGCTGTTAGGATTCCT CCTAGCATTTCGGCCAAATTGAAAGCACATCAGGTTGCAGGAATAAGGTTTATGTGGGAAAATATTATACAATCAATTGGACGAGTAAAGTCCGGAGACA AGGGTCTTGGTTGTATTTTGGCCCATACAATGGGCCTTGGTAAGACTTTCCAGGTCATAGCTTTCCTGTACACTGCTATGAGGAGTGTTGATTTGGGCTT AAAAACTGCCCTTATTGTTACCTCTGTCAATGTGCTCTATAACTGGCGTCATGAGTTCATGAAGTGGAAGCCTTCTGAAGTTAAACCCATCCGCGTTTTC ATGATGGAAGATGTATCAAGGGAAAGGAGAGGAGAATTGCTTGCAAAATGGAGAGCTAAGGGTGGTGTTTTCTTGATTGGCTACACTGCTTTCCGAAACT TATCCTTTGGAAGGCATGTCAAGGATCGAAACACTGCTAGAGAAATTAGCTGTGCCTTGCAGGAGAGACCTGATATACTTGTTTGCGATGAAGCTCACAT GATTAAGAATTCTAAAGCTGATACAACCCAAGCATTGAAACTTGTCAAATGCCAGAGAAGGATTGCACTAACTGGATCACCTCTTCAAAACAATCTAATG GAGTATTATTGTAAGGTTTTCTTGGCAGCAGCCATGAGTTCCGAAATCGGCAACTTCCAAAATCCGATAGAGAATGGACAGCATACCAACTCAACCTCTA ATGACGTTAAAATCATGAACCAAAGGTCACATATCCTCTATGAAGAACTAAAAGGATTTGTCCAAAGAATGGACATGGACGTGGTGAAAAAAGATCTGCC GCCTAAAACTGTCTTTGTAATAACTGTAAAGCTGTCACAACTTCAGAGGAAGTTATATAAAAAGTTCCTTGAGGTTCATGGTTTCGCAAGCGATAGCATC TACAACGAAAGGTCAAAGAGGAGCTTTTTTGCCGGATACCAGGCTTTGGCTCAGATATGGAATCATCCCGGGATTTTGCAATTGAGGAAAGATAAAGATC ATGTCAGCCATGAGGAAATTATTGAGAACGATGAAAACTCAAGTGATGAGAATGTGGATCATAATAACATTCTTGGAGAAAAAATAAAAAATGCCAATGG TAATCTGCAAGGAAAAAGTGAATATGGATTCCTCGTGAAGGGTTGGTGGAATGAACTTCTACGGGAAGATGATTATAAAGACCCAAACTACAGCGGGAAA ATGGTTCTGCTGCTTGAAATTCTAACCATGTGTTCCAGTGTGGGGGACAAGGCATTGGTTTTTAGTCAGAGCATACCAACATTGGATCTGATAGAATTTC ATCTATCAAGACTTCCTCGTCGTGGAAAGCCCGGAAAGTTTTGGAGAAAAGAGAAAGACTGGTACAGGCTAGACGGGAGAACCGAGAGCTCTGAAAGGCA GAAGTTGGTAGAAAGGTTTAATGACCCAGAAAACAAAAGGGTTAAATGTACCCTGATATCTACAAGAGCTGGATCTCTCGGGATAAATCTACATTCTGCT AACCGAGTCATCATCGTTGATGGTTCTTGGAATCCTACCTATGATCTTCAAGCAATTTATCGGGCATGGAGGTATGGCCAGAAAAAACCTGTATTTGCTT ACAGGATGATGGCACATGGAACCATGGAAGAAAAAATCTATAAGCGGCAGGTTACTAAAGAAGGGCTTGCTGCAAGGGTGGTCGATAGACAACAGGTACA CAGGACCATTTCGAGAGAGGAAATGTTGCACCTTTTTGAATTTGGAGATGAGGAAAACCCAGACACGTTGAATGATAATGGTGCAGAGAACACCAGTGGA GCTTCAGGGAAGCATAAAGTGCCACTTTTTAACGGAAGCTGCCCTTCAGACAAGGTTATGGAGAGCTTGCTTGGAAACCATCATCCAAGGTGGATTGCCA ATTACCACGAACACGAGACGCTTTTGCAAGAGAACGAGGAAGAAAAGCTAACGAAAGAAGAACAGGACATGGCGTGGGAGGTCTATAGGAGATCGATAGA TTGGAAAGAAGTGCAGCATACTCCGGTGGATGAATCTACGATCAACCAGAAGCAGCCTTTGCCGAAAACAGCAACTTCAGCTCCCCAACCCGGTGCACCA ACGTTGCCGGAGCAGCAGCAGCAGCGACCTCCGCGTACGGTTCGTAAGGTTGGAACTCTCGAACTTCCGAGGAACATCCTGAGGAATCGGGTTGCTCAGC GCAAATGCACAAACCTTTCTCATCTGCTGACCCTTAGAAGCCAGGGAACCAAATACGGGTGCACCACTGTGTGTGGAGAATGTGCCAAGGAGATCAAGTG GGAAGATTTGAACAAAGACGGCAAGATGGCGAGATGA
AA sequence Show only first row Show all	>Lus10032785 pacid=23159029 polypeptide=Lus10032785 locus=Lus10032785.g ID=Lus10032785.BGIv1.0 annot-version=v1.0 MEEKHEDYEEVEVASNGSSIGDSDDDELSTSGQDDDTHLEASCSRYFLSSSPEPLTEEEIQELISEFLEVESKAAEAQEALEKESLTKVETEVREELAQT LQGDELEATVQDEITTLKEEWEAVLDELETESAHLLEQLDGAGIELPSIYKLIESQAPDVCYTEAWKKRTHWVGSQVTTEVKSTVADAEKFLQDVRPVRR RHGKLLEEGASGFIQKKVGNVDGKTDSIAENRDQDWDSLNKLFSGDIRDGVSSFGSEHWASVYLANTPKEASMMGLKFPGVDEVEEIDDIDDNSSNPFVA LAIEHENELPLSEEQMKNYKKVKEDDDAKMEVQKLQHHLKKRRRRKKQKQSRDTIMDDSLPTDDSFVVKSQEHGEGVSGNPLVTSCGILGTETLEDGHFD REQPTTDGKPDSCVLTFNATRIIGAKRPYEHDNLNVSDKKIRTVDVGSDDVNNMKDNLAGDAIKVEHQAVVQELDQEYRCTACDKITPEIHSHPLLRVIV CKECKCMVEEKLLLKDPEFYCGWCAQSEDLVSCNSCINLFCRTCITKNIGQEGCPDSLACGWQCCCCLPNLLDRLTSELEKAVESVDSMDASSDSDSENS GSNINVAISSKRRRKKKIRRILDDAELGEETKRKIAIEKERQEHLKSLKVQFSGKSEMTRPATLHGNLPEGATAEVLGDRITGYVVNVVRDKGEEAVRIP PSISAKLKAHQVAGIRFMWENIIQSIGRVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLKTALIVTSVNVLYNWRHEFMKWKPSEVKPIRVF MMEDVSRERRGELLAKWRAKGGVFLIGYTAFRNLSFGRHVKDRNTAREISCALQERPDILVCDEAHMIKNSKADTTQALKLVKCQRRIALTGSPLQNNLM EYYCKVFLAAAMSSEIGNFQNPIENGQHTNSTSNDVKIMNQRSHILYEELKGFVQRMDMDVVKKDLPPKTVFVITVKLSQLQRKLYKKFLEVHGFASDSI YNERSKRSFFAGYQALAQIWNHPGILQLRKDKDHVSHEEIIENDENSSDENVDHNNILGEKIKNANGNLQGKSEYGFLVKGWWNELLREDDYKDPNYSGK MVLLLEILTMCSSVGDKALVFSQSIPTLDLIEFHLSRLPRRGKPGKFWRKEKDWYRLDGRTESSERQKLVERFNDPENKRVKCTLISTRAGSLGINLHSA NRVIIVDGSWNPTYDLQAIYRAWRYGQKKPVFAYRMMAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISREEMLHLFEFGDEENPDTLNDNGAENTSG ASGKHKVPLFNGSCPSDKVMESLLGNHHPRWIANYHEHETLLQENEEEKLTKEEQDMAWEVYRRSIDWKEVQHTPVDESTINQKQPLPKTATSAPQPGAP TLPEQQQQRPPRTVRKVGTLELPRNILRNRVAQRKCTNLSHLLTLRSQGTKYGCTTVCGECAKEIKWEDLNKDGKMAR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10032785 [exp]	0	1
AT1G66730		AtLIG6	DNA LIGASE 6 (.1)		Lus10017623 [exp]	2.0	0.8787
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	3.0	0.9127
AT3G57570			ARM repeat superfamily protein...		Lus10042364 [exp]	3.7	0.8869
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014896 [exp]	9.0	0.8828
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	11.5	0.8676
AT5G15270			RNA-binding KH domain-containi...		Lus10005232 [exp]	11.7	0.8676
AT5G06120			ARM repeat superfamily protein...		Lus10041603 [exp]	12.0	0.8710
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007388 [exp]	13.3	0.8563
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10030688 [exp]	13.8	0.8313
AT1G70630			Nucleotide-diphospho-sugar tra...		Lus10006212 [exp]	14.2	0.7933

Compare expression of checked genes

Lus10032785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.