Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18390 624 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 155 / 9e-41 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49730 152 / 4e-40 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65820 147 / 2e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 142 / 1e-36 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G06000 136 / 7e-35 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) AT1G79540 136 / 3e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G60050 133 / 4e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 134 / 1e-33 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G15010 133 / 1e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003575 [exp] 910 / 0 AT5G18390 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 145 / 1e-37 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034419 [exp] 143 / 4e-37 AT1G73400 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 144 / 7e-37 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 144 / 9e-37 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 142 / 2e-36 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016727 [exp] 140 / 3e-36 AT5G61990 345 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021074 [exp] 138 / 3e-36 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019141 [exp] 140 / 5e-36 AT1G73400 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G025700 [exp] 693 / 0 AT5G18390 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G032600 [exp] 168 / 9e-46 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034300 [exp] 158 / 3e-43 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 155 / 4e-41 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G200800 [exp] 152 / 2e-39 AT5G06400 1132 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034400 [exp] 149 / 6e-39 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050180 [exp] 147 / 3e-38 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.018G038300 [exp] 145 / 8e-38 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.002G109500 [exp] 144 / 3e-37 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.002G176100 [exp] 141 / 3e-36 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10032787 pacid=23159035 polypeptide=Lus10032787 locus=Lus10032787.g ID=Lus10032787.BGIv1.0 annot-version=v1.0 ATGCTCCGCTCCACCGCACTGCTTCTCTCTAGAGCCACCTCCGCCGCGGTCACACTTCCTCTCTCCCGCCGCTGCAGCGTCCAGACATTAGCTCCCAACA AAGACGCCTACTTCGCCGCCATCCACCAGATAACCAACATAGTCCGCCGCGACATCTACCCCGAACGCACTCTCAACAAGCTCAACTTCCCCGTCACCTC CGAGCTCGTCTTCCGCGTCCTCCGCGCTCTCTCCCATTCCCCCACCGAGTCCATACGCTTCTTCGCCTGGGCGCGCGGCCACTACACCCCGACCTCCATC GAAGCCGAGGAGCTCATCAAAACCCTAGCTCGCGGCAAGAGGTACGCTTCTATGTGGCAACTCATTTCTCAGATGAGGGATCACAGCCAACGGATGGTCA ACACTCCTGAACCCCAGAGAGCCTTCACCGTTTCCAGCGACACTGTTTGTTTCATCATCGAGGAGTACGGCAAAGGCGGACTTGTAGATCAGGCGATCCA GGTATTTAATAAGTGCAGTAGCATGAATTGCGAACAAGGCGTTGAGGTTTACAACTCTCTGCTTTCCGCTCTGTGTGATGTCAAGATGTTTCATGGAGCT TATGCTTTGATTAGGAGGATGGTTAGGAAAGGATTGGTTCCCAATAAGCGGACCTATGCTGTTCTTGTGAACGGATGGTGTTCTAGTGGGAAATTTAGAG AAGCTCAAGATTTTTTGGATGAGATGAGTAGGAAGGGATTCAATCCGCCTGTTAGAGGTAGGGATTTGTTGATTGAAGGCTTGTTGAATGCAGGGTATTT AGAGACTGCCAAGGATCTGGTTAGGAAAATGACCAAGGAAGGTTTCGTCCCCGATGTCAATACCTTCAATACTCTTGTCGAAGCGATTTGTCAAACTGGT GGGGAGATCGAGATCGATTTTTGCGTTGAAATGTATCATAATGTGTGCAGGTTGGGACTCTGTCCTGATATAAACAGTTATAAGATATTGATTCCTGCTG TTTCGAGAGTTGGCAAGATGAATGAAGCTTTTAAGCTGTTGCATAGTTCGATCGAACAGGGCCACAAGCCGTTTCCGAGTTTGTATGCGCCTATAATAAA GGGGCTGTGCAGGATAGGGAAATTCGACGATGCGTTTTGTTTCTTTGGGGAAATGAAGGTGAAAGGTCACCCTCCGAATAGGCCGGTTTATACAATGCTG ATTACCATGTGTGGGCGTGGTGGGAAGTATATGGAGGCGGCGAGTTATTTGTTAGAGATGACTGAGGTGGGTTTGAAACCTATTTCGAGATGTTTTGATC TTGTTGTTGATGGGTTGAAGAATTGTGGGAAGCATGATCTGGCTAAGCGAATTGAGCAGTTGGAAGTGTCTCTTTGCCAAGCTTGA
AA sequence Show only first row Show all	>Lus10032787 pacid=23159035 polypeptide=Lus10032787 locus=Lus10032787.g ID=Lus10032787.BGIv1.0 annot-version=v1.0 MLRSTALLLSRATSAAVTLPLSRRCSVQTLAPNKDAYFAAIHQITNIVRRDIYPERTLNKLNFPVTSELVFRVLRALSHSPTESIRFFAWARGHYTPTSI EAEELIKTLARGKRYASMWQLISQMRDHSQRMVNTPEPQRAFTVSSDTVCFIIEEYGKGGLVDQAIQVFNKCSSMNCEQGVEVYNSLLSALCDVKMFHGA YALIRRMVRKGLVPNKRTYAVLVNGWCSSGKFREAQDFLDEMSRKGFNPPVRGRDLLIEGLLNAGYLETAKDLVRKMTKEGFVPDVNTFNTLVEAICQTG GEIEIDFCVEMYHNVCRLGLCPDINSYKILIPAVSRVGKMNEAFKLLHSSIEQGHKPFPSLYAPIIKGLCRIGKFDDAFCFFGEMKVKGHPPNRPVYTML ITMCGRGGKYMEAASYLLEMTEVGLKPISRCFDLVVDGLKNCGKHDLAKRIEQLEVSLCQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18390			Pentatricopeptide repeat (PPR)...		Lus10032787 [exp]	0	1
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10015718 [exp]	1.4	0.8474
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019441 [exp]	3.9	0.8535
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043297 [exp]	6.0	0.8255
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	8.7	0.8144
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003324 [exp]	10.5	0.7906
AT5G63380			AMP-dependent synthetase and l...		Lus10002791 [exp]	18.7	0.7649
AT1G61670			Lung seven transmembrane recep...		Lus10025135 [exp]	20.1	0.7005
AT5G49120			Protein of unknown function (D...		Lus10006499 [exp]	22.3	0.7671
AT2G22900			Galactosyl transferase GMA12/M...		Lus10019265 [exp]	24.1	0.7629
					Lus10000961 [exp]	26.1	0.7385

Compare expression of checked genes

Lus10032787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.