Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029617 [exp] 258 / 9e-90 ND / Lus10032770 [exp] 241 / 3e-83 ND / Lus10029619 [exp] 205 / 3e-69 ND / Lus10042684 [exp] 204 / 5e-69 ND / Lus10003753 [exp] 127 / 3e-38 ND / Lus10003755 [exp] 121 / 4e-36 ND 37 / 0.002 Lus10008314 [exp] 117 / 2e-34 ND / Lus10003754 [exp] 116 / 3e-34 AT1G04520 39 / 3e-04 plasmodesmata-located protein 2 (.1) Lus10035753 [exp] 115 / 5e-33 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10032788 pacid=23159045 polypeptide=Lus10032788 locus=Lus10032788.g ID=Lus10032788.BGIv1.0 annot-version=v1.0 ATGGTTTATGTGTCGAAATTGGCTGCAACTACCACATTTCTAATTCTGGCTACTTTGATTATTGTGGTCATGGTCGAGGGTGCAGACAAGAGCGTCATCA ATGGGCCATACTGTATCAAGAAATCCTTCGACAGGGATTACAACAGGAATGCAAAACGTCTCATGGATATCCTTGTTGATGAAACTCGGGACAAGTATAA GATGAGGGATCATGAGGAATACAGGTACTATCATAGCTACCCAAATAAGGACTTGGGTTCCGTCCTTGGTGGTGGGTATTGCGTTGGACACCTCTCGAAA TGGGGATGTGGCAGTTGCCTTGGCTCTGCTAGGGACAAAATCAAATCCCGTTGCGATCATACATTTGAGGCCAGTGTTCAACTCACAGATTGTTCCCTTT GGTTCAGGAAGATTGTTAACAACACAAAACAGATTGAGTACTAG
AA sequence Show only first row Show all	>Lus10032788 pacid=23159045 polypeptide=Lus10032788 locus=Lus10032788.g ID=Lus10032788.BGIv1.0 annot-version=v1.0 MVYVSKLAATTTFLILATLIIVVMVEGADKSVINGPYCIKKSFDRDYNRNAKRLMDILVDETRDKYKMRDHEEYRYYHSYPNKDLGSVLGGGYCVGHLSK WGCGSCLGSARDKIKSRCDHTFEASVQLTDCSLWFRKIVNNTKQIEY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032788 [exp]	0	1
AT1G30050			unknown protein		Lus10035609 [exp]	7.6	0.9352
AT3G03080			Zinc-binding dehydrogenase fam...		Lus10003638 [exp]	10.7	0.9337
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	14.0	0.9273
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	16.1	0.9273
					Lus10028460 [exp]	16.9	0.8274
					Lus10009618 [exp]	18.0	0.9273
					Lus10005830 [exp]	19.7	0.9273
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	21.3	0.9273
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10039085 [exp]	22.8	0.9273
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	24.2	0.9273

Compare expression of checked genes

Lus10032788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.