Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09820 250 / 6e-78 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G11690 166 / 2e-46 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12775 162 / 1e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 161 / 2e-44 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63080 160 / 3e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63150 160 / 5e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63400 158 / 1e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62720 156 / 1e-43 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62914 157 / 2e-43 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63330 156 / 5e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027916 [exp] 166 / 8e-46 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 166 / 1e-45 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 166 / 3e-45 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003427 [exp] 153 / 5e-43 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10020134 [exp] 151 / 9e-43 AT1G12700 254 / 3e-78 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10012328 [exp] 155 / 5e-42 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 154 / 1e-41 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015716 [exp] 150 / 1e-41 AT5G61400 408 / 1e-137 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 153 / 2e-41 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G014500 [exp] 299 / 3e-95 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G050500 [exp] 168 / 3e-47 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.009G105600 [exp] 169 / 9e-47 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 167 / 1e-46 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 167 / 2e-46 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050240 [exp] 166 / 4e-46 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 164 / 8e-46 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 164 / 9e-46 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 164 / 1e-45 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050120 [exp] 158 / 1e-45 AT1G12700 295 / 3e-94 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10032789 pacid=23159040 polypeptide=Lus10032789 locus=Lus10032789.g ID=Lus10032789.BGIv1.0 annot-version=v1.0 ATGAGCCTGAAACAGTGTCTTCCCCTTGGAAGGTTCTCTCTTGTCTCCATTTCCCGGACTAACAATCATGGATTTCCGCGACTATTCAGTTCCACGAATG AAAACCTCTGGAATGCTACTGAGCTCATATCGAAACAACATTGGTCCAGTTTGAAACTTCTTCTACAAGCCTCCTCCGACCTCAAGTCTCTCCTCCATAA TTTACTTGATTCTGGAGCTAAACCTGAGCTAATTCTCAGCTACTTAACTTGGTCACATAGAGAGCTGAACCTGAATTACTCTTTGGAGGACACTTTTGGG GTCTTGCATTCACTCGCTTGTGCCAACTGTTACCCAAAGATCAGAGTTTATGTACAGGGAGATGGTCAAGAGAGAAGGATAGAGCTTAATTCGATTACCT TTAATATAGTGATTAATGGTTTGTGTAAAGCACGGAAGTTAAACAAGGCTCGTGGTGTCGTTCAGGACATGAAGGTGTTGGGTGTTTTAGAACCGAATGC GATTACTTACAATAGTCTAATTGACGGGCATTGTAAAATGGGTAGAATAGGGAAGATGTATAAAGCTGATGCAATCTTGAAGGAGATGGTGGCAAATGGG ATTCCTCCCAATGAAGTGACGTACAATATTCTGATTGATGGGTTTTGTAAAGATGATAATGTCTCGGCTGCTATGAAGGTGTTTGCTGAAATGGAACAGC AAGGTTTGAAACCAAACGTAATTACCTACAATGCCTTGATTAATGGGTTATGTAGTGGTAGCAAAGTCGACAAGGCTCTTGGTTTATGGGAGCAAATGGT TGGTTCAGGTGTAAAACCAAATGTTGTTACTCATAATGTACTCATAAATGGCTTCTGCAAGAACAAGATGCTGAAAGAAGCAAGTGAACTGTTTGATGAT ATGGAAAAACAAGGAATACCTCCTAATGTGACGACTTATAATACACTGATTGATGGATGCTTTTTGCAAGAACGGGGAGATGGAGCAGGCATTTTCACTG CCTGTGTTAATGTCGAAGAAGATGGTTTCTCCTAA
AA sequence Show only first row Show all	>Lus10032789 pacid=23159040 polypeptide=Lus10032789 locus=Lus10032789.g ID=Lus10032789.BGIv1.0 annot-version=v1.0 MSLKQCLPLGRFSLVSISRTNNHGFPRLFSSTNENLWNATELISKQHWSSLKLLLQASSDLKSLLHNLLDSGAKPELILSYLTWSHRELNLNYSLEDTFG VLHSLACANCYPKIRVYVQGDGQERRIELNSITFNIVINGLCKARKLNKARGVVQDMKVLGVLEPNAITYNSLIDGHCKMGRIGKMYKADAILKEMVANG IPPNEVTYNILIDGFCKDDNVSAAMKVFAEMEQQGLKPNVITYNALINGLCSGSKVDKALGLWEQMVGSGVKPNVVTHNVLINGFCKNKMLKEASELFDD MEKQGIPPNVTTYNTLIDGCFLQERGDGAGIFTACVNVEEDGFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09820			Pentatricopeptide repeat (PPR-...		Lus10032789 [exp]	0	1
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	1.0	0.9017
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10000213 [exp]	2.8	0.8771
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031156 [exp]	3.2	0.8809
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10038081 [exp]	5.2	0.8772
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Lus10027788 [exp]	6.5	0.8697
AT5G58870		FTSH9	FTSH protease 9 (.1)		Lus10040695 [exp]	8.9	0.8544
AT5G61450			P-loop containing nucleoside t...		Lus10031163 [exp]	9.2	0.8424
AT4G12010			Disease resistance protein (TI...		Lus10019654 [exp]	10.0	0.8727
AT3G14750			unknown protein		Lus10038143 [exp]	10.2	0.8588
AT5G46560			unknown protein		Lus10011046 [exp]	10.5	0.8515

Compare expression of checked genes

Lus10032789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.