Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70650 427 / 3e-146 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT1G55040 230 / 1e-66 zinc finger (Ran-binding) family protein (.1) AT1G48570 218 / 3e-65 zinc finger (Ran-binding) family protein (.1) AT5G17790 127 / 7e-31 VAR3 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) AT1G53460 57 / 9e-09 unknown protein AT2G26695 40 / 0.0009 Ran BP2/NZF zinc finger-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003580 [exp] 594 / 0 AT1G70650 323 / 8e-108 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10009049 [exp] 231 / 3e-70 AT1G48570 365 / 7e-123 zinc finger (Ran-binding) family protein (.1) Lus10009681 [exp] 210 / 1e-62 AT1G48570 334 / 3e-111 zinc finger (Ran-binding) family protein (.1) Lus10015180 [exp] 179 / 1e-48 AT1G55040 614 / 0.0 zinc finger (Ran-binding) family protein (.1) Lus10031502 [exp] 139 / 5e-35 AT1G55040 421 / 5e-137 zinc finger (Ran-binding) family protein (.1) Lus10013630 [exp] 115 / 6e-27 AT5G17790 338 / 4e-103 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10003872 [exp] 109 / 5e-25 AT5G17790 453 / 1e-148 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10019433 [exp] 49 / 2e-06 AT2G26695 198 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10043289 [exp] 46 / 2e-05 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107400 [exp] 561 / 0 AT1G70650 449 / 4e-154 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Potri.015G038200 [exp] 234 / 2e-71 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.012G046500 [exp] 233 / 2e-69 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) Potri.005G033000 [exp] 221 / 1e-63 AT1G55040 531 / 5e-177 zinc finger (Ran-binding) family protein (.1) Potri.013G022300 [exp] 213 / 5e-60 AT1G55040 543 / 1e-179 zinc finger (Ran-binding) family protein (.1) Potri.013G067200 [exp] 145 / 1e-36 AT5G17790 466 / 6e-152 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Potri.001G376900 [exp] 60 / 1e-09 AT1G53460 254 / 3e-83 unknown protein Potri.003G061300 [exp] 46 / 1e-05 AT3G15680 161 / 2e-51 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.018G029900 [exp] 44 / 3e-05 AT3G15680 176 / 4e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.006G251300 [exp] 43 / 9e-05 AT3G15680 167 / 1e-53 Ran BP2/NZF zinc finger-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00641 [flax] [poplar] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Lus10032790 pacid=23159008 polypeptide=Lus10032790 locus=Lus10032790.g ID=Lus10032790.BGIv1.0 annot-version=v1.0 ATGCATCAGATGTCATGCTCTAATCGTGTGTCTATGTACTTACGCACACATAAGCATGGTGGAAACTGGTGTTTTTCATGGCTGAGACCGCTTTCCAGTG AAACTGAGGCCTTGGATTCATCGAAATCCAGAAACCAGATAGCTCAGCCATGTTTGTCGAGTCAGACTGAAGTAAGTAGGGAGAATGGGGAGGCATTTCA GATTTCACACCCTTGGCCTGAATGGATGGATTTGATGGAATTGTTGGTTAGGAGAGGGTACTACAAGGCTGATGGAAATCCATTTCAAAATGAGAAATTG GGGCCTAAAGAAACAAACAGCATCAGGACAGCATGCCTTAATTTTGCACGTGATAAGTTCGGACTTATAAGGTTCTTTTCAAGAGAAGATATCCAGATAG TTTCGAAATTTGGCTGCCCAACCTTGGACAGGAAAGTTATCAACTCAGCAAAACGTCTACGTGCCCATGTGGGTGTTGATGAAGGCAATGTCTGTAGCTC CTGTAACTTGAGGGGAGACTGTGACAGGGCCTACGTAAAGGCCCGTGAAGATGAAGGTGGGCGGACTGTCGATGTTATGCGAATTGTGATGACTCACGGG CTGGATTTCGTTTCTGGTGCTGTGGTAAATAAGCCATGTCAAAACAAATTGGTGAAAGAGTCCGTTAGGAAATTACTGAAAGAAATGGCAGAATATGGCG GCCAGCAACTCGACTCTGATGGGTCACAGAACACACCCTTTGAAACAAGAATAACTGCGAGGCACGGTTCAATTTCGGAAGAAAAGGGATTCCCAAAGGT TGCCATGAAGCAAGGCGACTGGCATTGCCCCAACTGCGAGTTCCTGAATTTTACGAGAAACATCAAATGCTTGCGATGCAATGTTTTTTCTGAAGAAAAG CTTAAGCATTTGAGGGAAGATCGAGACCATCTTCCCTTGAAGAAAGGCGATTGGGTTTGTGTAAGGTGCAATTTCTTGAACTTTGCCAAGAACACAAGAT GTTTGCAATGCGAAGAAAGACCTCCGAAGAGGCATATGAATCCTGGAGAATGGGAATGCGAGTCGTGCAATTACATAAACTTTAGGAGGAACATGGTATG CTTGAAATGTGATCATAGACGGCCAAAGGCCTCGAATGCTTCGAGTACGCCTTCTAAGCTTGAACATGTCAATGTAGCCAATGCTGAAGGTGGTGAATCA AGGTCTGTTAACAAAGACGATAACCGATGTAATCTAAAGTTACGTGCAAACAGCTGGAGATTTGTGGAAGAAGGAAGAAACGATACAGAGGATGGTTCCG GGTTTATGAATTTCCCGATTGCAGGAGGGAAGAGCAACTTGTCACGAGATCCAACTGCGAGGGAAGAATGGAAGCTGCAGATGTTGGAACGGTCCAGAGT TGGTACGGGGGAAAAGAGTAGCAGTGAAGAATATGGAAACAATGATGGACAACAAGGGCCGGGATGGCTGAAGAATCACATTGGTGATAACGATGAAGAA GAAATGGCCACATGGTTTGGGAGTGGGAGGAAATTGTAA
AA sequence Show only first row Show all	>Lus10032790 pacid=23159008 polypeptide=Lus10032790 locus=Lus10032790.g ID=Lus10032790.BGIv1.0 annot-version=v1.0 MHQMSCSNRVSMYLRTHKHGGNWCFSWLRPLSSETEALDSSKSRNQIAQPCLSSQTEVSRENGEAFQISHPWPEWMDLMELLVRRGYYKADGNPFQNEKL GPKETNSIRTACLNFARDKFGLIRFFSREDIQIVSKFGCPTLDRKVINSAKRLRAHVGVDEGNVCSSCNLRGDCDRAYVKAREDEGGRTVDVMRIVMTHG LDFVSGAVVNKPCQNKLVKESVRKLLKEMAEYGGQQLDSDGSQNTPFETRITARHGSISEEKGFPKVAMKQGDWHCPNCEFLNFTRNIKCLRCNVFSEEK LKHLREDRDHLPLKKGDWVCVRCNFLNFAKNTRCLQCEERPPKRHMNPGEWECESCNYINFRRNMVCLKCDHRRPKASNASSTPSKLEHVNVANAEGGES RSVNKDDNRCNLKLRANSWRFVEEGRNDTEDGSGFMNFPIAGGKSNLSRDPTAREEWKLQMLERSRVGTGEKSSSEEYGNNDGQQGPGWLKNHIGDNDEE EMATWFGSGRKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70650			Ran BP2/NZF zinc finger-like s...		Lus10032790 [exp]	0	1
AT3G51270			protein serine/threonine kinas...		Lus10013682 [exp]	7.1	0.8791
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10014653 [exp]	10.4	0.8625
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040080 [exp]	12.5	0.8728
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10009155 [exp]	14.6	0.8664
AT4G26410			Uncharacterised conserved prot...		Lus10034621 [exp]	19.1	0.7980
AT5G59440		ATTMPK.2, ATTMP...	ZEUS1, ARABIDOPSIS THALIANA TH...		Lus10027801 [exp]	20.6	0.8389
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	24.4	0.8548
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10025018 [exp]	24.7	0.8189
AT3G47630			unknown protein		Lus10023597 [exp]	26.6	0.8481
AT4G36720		HVA22K	HVA22-like protein K (.1)		Lus10010093 [exp]	27.7	0.8496

Compare expression of checked genes

Lus10032790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.