Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04310 102 / 3e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003583 [exp] 450 / 1e-160 AT3G04310 140 / 1e-39 unknown protein Lus10004401 [exp] 64 / 3e-11 AT3G04310 81 / 3e-17 unknown protein Lus10023703 [exp] 57 / 7e-09 AT2G33250 74 / 1e-14 unknown protein Lus10008444 [exp] 40 / 0.0002 AT1G58100 104 / 5e-28 TCP domain protein 8, TCP family transcription factor (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G023400 [exp] 116 / 2e-30 AT3G04310 108 / 9e-28 unknown protein Potri.010G063300 [exp] 66 / 4e-12 AT3G04310 88 / 3e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032791 pacid=23158958 polypeptide=Lus10032791 locus=Lus10032791.g ID=Lus10032791.BGIv1.0 annot-version=v1.0 ATGGGGAATTATCGGCGCCTTCTTCTTCTCCAGCCCCACTTCAATCAATCATCGCCGCTACTACCGTCGGTTTCCGTTCAATTCCCCGACGATTTCCGGC ATTCCGAGATTTCGCCTCACGGGGGTGATCTCTTCCATTTCACTTGGCGGAAGAATAATTCGGCTACGAATTTGAGCTGGCGGCTGAGCTATAACTTCAG AGATGAGCAGCTCTTCACTGACGACGGCGGTGATCGGTACGACGGCTTCCGGTTCGGCGGAGCTTCGAAGAAGCGAGTCTGGTGGCTAGATGACGATGAA GAATATGATTGTGATTCTGATTCCGATTCCTATTCGTGGGAGTTCGGTGGTTCAAGGAACGAGTTCCCGATTTTCAAGGTGATATCAGCTTTGGGTTGGA TGGTTCCAGCCTTTGCAGTATCTATGATAGTAGGAACAGACCAAAATGCATTGGTCATGGCATTAGCGGTTCCACTGGTACAGACTGCAGTTTCTGTTGT AGTTGATAAGCTTTGGGCATACGATAGGCCAAGAACCAAGTCCTGGGTCAGAACAAGGAGAAAGCCTTCCAATGGAGGTGGTTCTACTAGGACACAAACA AGAGAAAGAAAGGAACAAGAAGTGGAGAGCAGAACTGGTAATGGAAGTGGGAACGGCTACCAGTCCTGGGTTTCATCAGACGATGGTTCGAGCCATAGCG AGGAGGGGACGCAGTTTGGTGGATGGGATGAGCTAGATAGAGAAAAAAGTGAAGCTCGTCGGCCAAGGACGAATAAGAGTGTACCGAATCGTGGTAGCAA GGCAGAATATGGGTCGAGGAAGCAAGGTAATAGAGTTAGGATGAACAGGACGAGAAGAGTTAGGGATAGACCACTGTTGATTCGGCTGCTGGTTTCTGTT TTCCCTTTCATGTCATCGTGGTCTTCTTTTCTACTTTGA
AA sequence Show only first row Show all	>Lus10032791 pacid=23158958 polypeptide=Lus10032791 locus=Lus10032791.g ID=Lus10032791.BGIv1.0 annot-version=v1.0 MGNYRRLLLLQPHFNQSSPLLPSVSVQFPDDFRHSEISPHGGDLFHFTWRKNNSATNLSWRLSYNFRDEQLFTDDGGDRYDGFRFGGASKKRVWWLDDDE EYDCDSDSDSYSWEFGGSRNEFPIFKVISALGWMVPAFAVSMIVGTDQNALVMALAVPLVQTAVSVVVDKLWAYDRPRTKSWVRTRRKPSNGGGSTRTQT RERKEQEVESRTGNGSGNGYQSWVSSDDGSSHSEEGTQFGGWDELDREKSEARRPRTNKSVPNRGSKAEYGSRKQGNRVRMNRTRRVRDRPLLIRLLVSV FPFMSSWSSFLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04310			unknown protein		Lus10032791 [exp]	0	1
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000484 [exp]	10.9	0.6740
AT5G66090			unknown protein		Lus10028414 [exp]	13.7	0.6822
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Lus10030874 [exp]	15.9	0.6639
AT3G62790			NADH-ubiquinone oxidoreductase...		Lus10021691 [exp]	21.4	0.6636
AT5G55980			serine-rich protein-related (....		Lus10043215 [exp]	26.2	0.6566
AT1G67856			RING/U-box superfamily protein...		Lus10011416 [exp]	38.7	0.6560
AT3G24060			Plant self-incompatibility pro...		Lus10033675 [exp]	40.9	0.5160
AT5G54750			Transport protein particle (TR...		Lus10028720 [exp]	49.1	0.6333
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10005095 [exp]	50.8	0.5647
AT1G18180			Protein of unknown function (D...		Lus10009061 [exp]	60.2	0.5946

Compare expression of checked genes

Lus10032791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.