Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43590 234 / 2e-77 Chitinase family protein (.1) AT2G43610 228 / 3e-75 Chitinase family protein (.1) AT2G43620 222 / 1e-72 Chitinase family protein (.1) AT3G54420 220 / 4e-72 ATCHITIV, CHIV, ATEP3 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) AT2G43580 207 / 7e-67 Chitinase family protein (.1) AT2G43570 195 / 4e-62 CHI "chitinase, putative", chitinase, putative (.1) AT3G47540 163 / 2e-50 Chitinase family protein (.1.2) AT1G56680 158 / 1e-47 Chitinase family protein (.1) AT2G43600 153 / 8e-46 Chitinase family protein (.1) AT3G12500 138 / 3e-39 PR-3, PR3, CHI-B, B-CHI, ATHCHIB PATHOGENESIS-RELATED 3, basic chitinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003587 [exp] 364 / 1e-129 AT2G43590 270 / 1e-91 Chitinase family protein (.1) Lus10024368 [exp] 336 / 2e-118 AT2G43590 264 / 2e-89 Chitinase family protein (.1) Lus10010861 [exp] 332 / 1e-116 AT2G43590 263 / 6e-89 Chitinase family protein (.1) Lus10010862 [exp] 332 / 1e-116 AT2G43590 262 / 1e-88 Chitinase family protein (.1) Lus10035624 [exp] 267 / 9e-90 AT2G43590 246 / 5e-81 Chitinase family protein (.1) Lus10010866 [exp] 255 / 1e-86 AT3G54420 239 / 1e-79 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003227 [exp] 256 / 2e-85 AT2G43590 241 / 7e-79 Chitinase family protein (.1) Lus10024369 [exp] 253 / 2e-85 AT3G54420 230 / 6e-76 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Lus10003226 [exp] 250 / 5e-83 AT3G54420 269 / 2e-89 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G093900 [exp] 254 / 2e-85 AT3G54420 360 / 3e-126 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094000 [exp] 252 / 1e-84 AT3G54420 340 / 2e-118 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G094100 [exp] 250 / 1e-83 AT3G54420 350 / 3e-122 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125100 [exp] 246 / 3e-82 AT3G54420 336 / 1e-116 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093800 [exp] 246 / 4e-82 AT3G54420 369 / 8e-130 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.013G125000 [exp] 225 / 8e-74 AT3G54420 421 / 1e-150 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.019G093700 [exp] 219 / 1e-71 AT3G54420 413 / 3e-147 CHITINASE CLASS IV, homolog of carrot EP3-3 chitinase (.1) Potri.002G186500 [exp] 154 / 5e-46 AT1G02360 413 / 2e-147 Chitinase family protein (.1) Potri.004G182000 [exp] 154 / 1e-45 AT3G12500 460 / 5e-164 PATHOGENESIS-RELATED 3, basic chitinase (.1) Potri.009G141700 [exp] 152 / 5e-45 AT3G12500 405 / 3e-142 PATHOGENESIS-RELATED 3, basic chitinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0037 [flax] [poplar] Lysozyme PF00182 [flax] [poplar] Glyco_hydro_19 Chitinase class I
Representative CDS sequence Show only first row Show all	>Lus10032794 pacid=23158932 polypeptide=Lus10032794 locus=Lus10032794.g ID=Lus10032794.BGIv1.0 annot-version=v1.0 ATGGGAAAGCTTCAACTTCTCACCGTTGCCTTGACCGTATTTCTGGCCGCAGCAGTCGCAGTTGATGCTATTGCGGTGGGCAGCGTCGTCACTCCATCCT TCTTCAATGGGATGCTCAGCCAGGCCAGTTCCGGATGCAAGGGTAAGCACTTCTACACACGTGATTCCTTCCTCGCTGCCGCAACTTCTTACCCTCGCTT CGGTCACCTCGACACCAACCTCATGTCCAAGCGCGAGATCGCTGCCTTCTTCGCCCATGTCACCCACGAAACTGGACACTTTTGCTATGTGGAAGAAATA GCTCGTGGGAAATACTGTTCGGCATCAAGCCAATACCCATGTGCTCCAGGGAAGAAATACTACGGCCGTGGGCCCATACAGCTAACGTGGAACTATAACT ACGGTGCGTGTGGAAAGGCTAACAACTTCGATGGACTCAAGAACCCTGACATTGTGTCTACGAATCCTACGATTGCGTGGAAAACGGGTTTGTGGTTCTG GATGAAGAATGTTCGCACTGTAGTGGACAAAGGGTTTGGTGCCACCATTCGTCGCATTAATGGCGGAGAGTGCAACGGCGGGAGTCCTAAAGCTGTGGCT GCTCGTGTCAAGTATTACAAAGCTTACTGCACTGCTTTTGGGATCACTCCTGGCCCCAATCTCACTTGCTAG
AA sequence Show only first row Show all	>Lus10032794 pacid=23158932 polypeptide=Lus10032794 locus=Lus10032794.g ID=Lus10032794.BGIv1.0 annot-version=v1.0 MGKLQLLTVALTVFLAAAVAVDAIAVGSVVTPSFFNGMLSQASSGCKGKHFYTRDSFLAAATSYPRFGHLDTNLMSKREIAAFFAHVTHETGHFCYVEEI ARGKYCSASSQYPCAPGKKYYGRGPIQLTWNYNYGACGKANNFDGLKNPDIVSTNPTIAWKTGLWFWMKNVRTVVDKGFGATIRRINGGECNGGSPKAVA ARVKYYKAYCTAFGITPGPNLTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43590			Chitinase family protein (.1)		Lus10032794 [exp]	0	1
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013922 [exp]	3.0	0.9198
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10017014 [exp]	6.0	0.9012
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10041993 [exp]	6.0	0.8070
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10037942 [exp]	7.1	0.7942
AT5G51890			Peroxidase superfamily protein...		Lus10038054 [exp]	8.7	0.9162
AT3G62890			Pentatricopeptide repeat (PPR)...		Lus10033544 [exp]	10.2	0.8714
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Lus10016515 [exp]	12.0	0.8535
AT1G31350		KUF1	KAR-UP F-box 1 (.1)		Lus10034748 [exp]	14.0	0.8731
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026623 [exp]	14.7	0.8133
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10022892 [exp]	15.2	0.8593

Compare expression of checked genes

Lus10032794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.