Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32070 42 / 5e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G80780 41 / 9e-05 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT1G06450 40 / 0.0002 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G15920 39 / 0.0003 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000327 [exp] 73 / 4e-16 AT1G06450 174 / 1e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10008043 [exp] 70 / 6e-15 AT1G06450 165 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035078 [exp] 69 / 1e-14 AT1G06450 168 / 2e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017895 [exp] 66 / 3e-14 AT1G06450 98 / 4e-26 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10001651 [exp] 62 / 6e-12 AT1G61470 167 / 4e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035077 [exp] 61 / 2e-11 AT1G61470 162 / 6e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017905 [exp] 59 / 6e-11 AT1G06450 162 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10007771 [exp] 59 / 7e-11 AT1G61470 170 / 5e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029710 [exp] 46 / 2e-06 AT5G10960 147 / 2e-42 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G040400 [exp] 46 / 1e-06 AT5G22250 253 / 4e-84 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 46 / 1e-06 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.001G046700 [exp] 42 / 5e-05 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.018G038700 [exp] 42 / 6e-05 AT1G61470 182 / 8e-56 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G186300 [exp] 42 / 6e-05 AT5G22250 261 / 9e-87 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.018G020900 [exp] 39 / 0.0003 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G262500 [exp] 39 / 0.0005 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.016G073000 [exp] 38 / 0.0008 AT3G44260 322 / 5e-111 CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032797 pacid=23164793 polypeptide=Lus10032797 locus=Lus10032797.g ID=Lus10032797.BGIv1.0 annot-version=v1.0 ATGGATTCTTTTCATGTGAGGGAAGTCTGGAACGATAACTCGATCCATGAATTGAAAGCCATGGAAGAATGTCTAACGAAGTATCCAGTTGTGTCGGCCG ACTCCGAATTCCAAGGCTTCCTCCGTCCCACTCCAAGGAACTTCGACTCCAGCATGCCACGTCAATCGATCACAACGACGCCAGCGACAAGCAACCCGTC CATCGAACGCAAAGGGCCAGCCGCTCCTAGTGGCTATACCACGAGTGCAAAATCCGGCGATGACAAGGAGCTCGGAAACGTTAGGGGGATCAACTCCGAT GAACCCCATGTTGACACAACCAAGAGTGGTTCTGGAATTGTCCCAATCGAACTTGGGGATCCTCAGTCCAAAGCTTGTTGCTTGGAGAGAGCGACAATGA GGAATCCCTAA
AA sequence Show only first row Show all	>Lus10032797 pacid=23164793 polypeptide=Lus10032797 locus=Lus10032797.g ID=Lus10032797.BGIv1.0 annot-version=v1.0 MDSFHVREVWNDNSIHELKAMEECLTKYPVVSADSEFQGFLRPTPRNFDSSMPRQSITTTPATSNPSIERKGPAAPSGYTTSAKSGDDKELGNVRGINSD EPHVDTTKSGSGIVPIELGDPQSKACCLERATMRNP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80780			Polynucleotidyl transferase, r...		Lus10032797 [exp]	0	1
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10023990 [exp]	6.7	0.6090
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10020791 [exp]	7.2	0.6902
AT1G21550			Calcium-binding EF-hand family...		Lus10040888 [exp]	9.2	0.5979
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Lus10006368 [exp]	13.0	0.6159
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025506 [exp]	15.3	0.6827
					Lus10011928 [exp]	15.8	0.6703
AT3G19340			Protein of unknown function (D...		Lus10012584 [exp]	21.2	0.6221
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019760 [exp]	25.8	0.6331
AT4G23350			Protein of Unknown Function (D...		Lus10042273 [exp]	34.3	0.6168
					Lus10013743 [exp]	36.5	0.6008

Compare expression of checked genes

Lus10032797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.